PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han004528

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

DBB

Protein Properties

Length: 326aa MW: 35655.4 Da PI: 4.2906

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-2613	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	8e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ + e + +C++++ +lC +C ++H+ H++ Han004528 4 NCDYCREARSMVYCRSDEAYLCLSCDRNIHSAnalskrHSR 44 6*****************************65677777766 PP
2	zf-B_box	26.1	1.8e-08	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + + lC++C e+H+g H+++ Han004528 46 LVCDKCNSQPAVVRCVQEKLSLCQNCDWESHSGsnsasgsHSRQ 89 68*****************************8888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	1.10E-6	5	47	No hit	No description
PROSITE profile	PS50119	9.698	5	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.9E-6	5	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.788	43	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-5	46	89	IPR000315	B-box-type zinc finger
CDD	cd00021	1.63E-5	47	91	No hit	No description
SMART	SM00336	1.1	48	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGYNCDYCRE ARSMVYCRSD EAYLCLSCDR NIHSANALSK RHSRTLVCDK CNSQPAVVRC 60 VQEKLSLCQN CDWESHSGSN SASGSHSRQT LNCYSGCPSA VELSSIWSFM SDSDNKNGQD 120 SACEQEMGLM SITDNKSGQD LLVPVENNDA QNVIQQPDPN NSFTFKTSGT KGSEQYMDVA 180 FCDDFSMDEV DLSIEKYEVL FGVGNNDPEN LFAQDGIDSL FGPMDTSVAK ESSTGYENGF 240 QPACSNAASG DSLRSCKTEP NPCYRTQLSN ISFSSLTGDS NAGDYQDCGA SSILLRXEPT 300 WSTPAHDSTT SSGIRNDAVL RYKEKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021982538.1	0.0	zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_021982539.1	0.0	zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_021982540.1	0.0	zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_021982542.1	0.0	zinc finger protein CONSTANS-LIKE 10-like
Swissprot	Q9LUA9	1e-102	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	A0A251TX63	0.0	A0A251TX63_HELAN; Putative B-box type zinc finger protein with CCT domain-containing protein
STRING	XP_009768363.1	1e-116	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	4e-99	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]