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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003587 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 180aa MW: 21321.4 Da PI: 10.0531 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv+f+kRrng++KKA+ELSvLCd++ av +fs ++klye+s+ Han003587 9 KRIQDKVSRQVSFTKRRNGLMKKAHELSVLCDVDLAVFVFSGRNKLYEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 24.6 | 1.1e-09 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + e+l+ ++++++ e + +q hl ++++ ++ eL qLe+q+e l+++R+ K++l+l +++lq+ +k+l+++++ ++ k+ Han003587 80 VRRTVREELTLQYRNVRTADELTEMTQWHLNEHKVQQADVSELFQLEKQIEANLQQVRTIKTKLMLGVVKNLQEEQKQLRQDKRLMEGKV 169 6667778888899999999888889999*****************************************************999877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.632 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.51E-36 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-29 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.132 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.3E-7 | 86 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGRGKVELKR IQDKVSRQVS FTKRRNGLMK KAHELSVLCD VDLAVFVFSG RNKLYEFSTG 60 DSMPDILKRY EDHKHADEAV RRTVREELTL QYRNVRTADE LTEMTQWHLN EHKVQQADVS 120 ELFQLEKQIE ANLQQVRTIK TKLMLGVVKN LQEEQKQLRQ DKRLMEGKVA NELRIWERNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-21 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022026011.1 | 1e-128 | truncated transcription factor CAULIFLOWER A-like | ||||
TrEMBL | A0A251RPX1 | 1e-127 | A0A251RPX1_HELAN; Putative AGAMOUS-like 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 3e-44 | AGAMOUS-like 31 |