PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003381
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 201aa    MW: 22616.4 Da    PI: 7.7541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32087147PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-17544PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1985135255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrdp ++g  +r++lg++ t+e+Aa a+++a+ k++g
  Han003381  85 KFRGVRRRP-WGKYAAEIRDPAKRG--ARVWLGTYETPEDAAVAYDQAAFKIRG 135
                89*******.**********97765..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3184144IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2385144IPR016177DNA-binding domain
PROSITE profilePS5103224.30285143IPR001471AP2/ERF domain
SMARTSM003801.4E-3685149IPR001471AP2/ERF domain
CDDcd000181.08E-3085145No hitNo description
PfamPF008471.3E-1285135IPR001471AP2/ERF domain
PRINTSPR003678.2E-138697IPR001471AP2/ERF domain
PRINTSPR003678.2E-13125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MFQDQSFMSE ADLSFLDSIQ HHLLFDTQIP DLFPVIDSGY SGNVATVGDM SVSSGFVQPV  60
VKLERPEVVE NQEFQGTQVA QEFRKFRGVR RRPWGKYAAE IRDPAKRGAR VWLGTYETPE  120
DAAVAYDQAA FKIRGSRALL NFPHLIGTNM VEPVRVAPRR KTVMRDVSPR SSSSSEDGGV  180
KRARISSGGD TMVDDFYYRP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2984143463ATERF1
3gcc_A1e-2984143463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.80040.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022023346.11e-140ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-40ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A251RSJ51e-132A0A251RSJ5_HELAN; Putative DNA-binding domain-containing protein
STRINGXP_009593489.15e-56(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-42ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]