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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003249 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||||||
Protein Properties | Length: 211aa MW: 23583.5 Da PI: 7.6658 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aaka++ a+++++g Han003249 46 PVFRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSTAEMAAKAHDVAALSIKG 96 579****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-12 | 46 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 47 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 47 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.3E-36 | 47 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 47 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.93E-31 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 3.2E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAAISRKPDV QTVPATPHKG VVDDQPVPEN SKNKKRNRKD VSYKHPVFRG VRMRSWGKWV 60 SEIRQPRKKS RIWLGTFSTA EMAAKAHDVA ALSIKGNSAI LNFPELKDSL PRPVSLSPRH 120 VQEAAAKAAS MLEFARTPTP PTQPPLTESN PVDELGEITE LPSLDGNELV KVDSVDQWVY 180 PSWEVADIDG FLEYVSYXMA DNYNTQLILD C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 39 | 104 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022010000.1 | 1e-153 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 8e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A251VCS1 | 1e-151 | A0A251VCS1_HELAN; Putative DNA-binding domain-containing protein | ||||
STRING | Gorai.003G063500.1 | 5e-57 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-56 | ERF family protein |
Publications ? help Back to Top | |||
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