PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 211aa    MW: 23583.5 Da    PI: 7.6658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32092405PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-60704PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-184696155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + ++GVr ++ +g+Wv+eIr p++   + r++lg+f tae+Aaka++ a+++++g
  Han003249 46 PVFRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSTAEMAAKAHDVAALSIKG 96
               579****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-124696IPR001471AP2/ERF domain
PROSITE profilePS5103222.48447104IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2047104IPR016177DNA-binding domain
SMARTSM003806.3E-3647110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3147105IPR001471AP2/ERF domain
CDDcd000188.93E-3148106No hitNo description
PRINTSPR003673.2E-104859IPR001471AP2/ERF domain
PRINTSPR003673.2E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAAISRKPDV QTVPATPHKG VVDDQPVPEN SKNKKRNRKD VSYKHPVFRG VRMRSWGKWV  60
SEIRQPRKKS RIWLGTFSTA EMAAKAHDVA ALSIKGNSAI LNFPELKDSL PRPVSLSPRH  120
VQEAAAKAAS MLEFARTPTP PTQPPLTESN PVDELGEITE LPSLDGNELV KVDSVDQWVY  180
PSWEVADIDG FLEYVSYXMA DNYNTQLILD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1939104672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022010000.11e-153dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD38e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251VCS11e-151A0A251VCS1_HELAN; Putative DNA-binding domain-containing protein
STRINGGorai.003G063500.15e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]