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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002913 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NF-YA | ||||||||||||
Protein Properties | Length: 232aa MW: 25804.5 Da PI: 7.2522 | ||||||||||||
Description | NF-YA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.1 | 1.2e-32 | 119 | 175 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR Rg+gGrF Han002913 119 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHALRRVRGTGGRF 175 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.4E-36 | 117 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.713 | 118 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.4E-27 | 120 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-24 | 121 | 143 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 123 | 143 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.2E-24 | 152 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRANSSDSSP PEQSLDRESQ SDEVLSEEED DASKETQNAS SFRSDKNYQQ QGVPNILPNN 60 GETVGQVPQL ELVGHTIACA PNPYCDPYYG GMMAAYCQPF VHPQFLEQAR MPLPLEMAQE 120 PVYVNAKQYH AILRRRQSRA KAELEKKLIK DRKPYLHESR HQHALRRVRG TGGRFAKKTD 180 VNKNTTGSGS GSAMSSSQSV NSNRVHSESA ESLDTPRGGL VNSLNTHTYL DN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-20 | 119 | 175 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022005860.1 | 1e-173 | nuclear transcription factor Y subunit A-9-like | ||||
Refseq | XP_022005861.1 | 1e-173 | nuclear transcription factor Y subunit A-9-like | ||||
Swissprot | Q9LXV5 | 7e-56 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A251SJV1 | 1e-171 | A0A251SJV1_HELAN; Putative nuclear transcription factor Y subunit A | ||||
STRING | Solyc11g065700.1.1 | 2e-74 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-56 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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