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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002893 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | bHLH | ||||||||||||
Protein Properties | Length: 233aa MW: 26212.9 Da PI: 7.4542 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.0003 | 22 | 64 | 1 | 47 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekA 47 +r + erE+ R+++N+ f eL + l ++s+ Ka++L ++ Han002893 22 KRIHKAEREKLKREHLNELFLELASALELtE--QNSG---KASVLGET 64 688899********************99943..4444...45555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.62E-4 | 19 | 83 | No hit | No description |
PROSITE profile | PS50888 | 10.734 | 21 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-11 | 21 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-7 | 22 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAAERSPTCL QTNKKNPAKV PKRIHKAERE KLKREHLNEL FLELASALEL TEQNSGKASV 60 LGETTRVVKD MIDQIKSLKK ENAALQSETQ YVTVERNELQ DETCTLQKQI SELQSMIKER 120 NVQTNLDLNA PAIESQEPQF PTYFPQEMMR LPTGDPVLNP VFVIPGCQNV QVHAQPELRT 180 GHNPVSNVSK PNPRYPTPSD SWPFQLLEKP SQESRGGLTQ GTSLIFVILT KAC |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022039356.1 | 1e-152 | transcription factor bHLH47-like | ||||
Refseq | XP_022039357.1 | 1e-152 | transcription factor bHLH47-like | ||||
Swissprot | Q9SN74 | 1e-47 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A251USN0 | 1e-151 | A0A251USN0_HELAN; Putative basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | XP_009612854.1 | 5e-66 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-39 | bHLH family protein |