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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001754 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||||||
Protein Properties | Length: 287aa MW: 31762.9 Da PI: 6.507 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5.3e-07 | 244 | 264 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C FaHg Han001754 244 PCPEFRK-GSCVKGDLCEFAHG 264 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 3.8E-10 | 57 | 133 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.02E-18 | 60 | 152 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0022 | 64 | 94 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.1E-19 | 64 | 165 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.17E-16 | 64 | 159 | No hit | No description |
PROSITE profile | PS50297 | 18.086 | 64 | 160 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0032 | 99 | 131 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.155 | 99 | 134 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 9.3E-5 | 100 | 115 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 9.3E-5 | 118 | 132 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-5 | 236 | 266 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-4 | 239 | 265 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.836 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEGEIKFQEK QIGAFLNSSS LLELAATDDV FRLQYEVETN GTRLDDVGLW YGRKNGCKTK 60 MGLEKRTPLM IASVYGSTNV VKYIIGSGKA DVNKVSDSDG ATALHCVAAG GSSSSVETVK 120 LLLEAGADQN LTDANGNKPV DLIARGVKSA KRKALEMLLK GLLINEAEIE EAEVVTAKKE 180 YPVDVSLPDI NEGVYGTDEF RMYMFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKHQY 240 TCVPCPEFRK GSCVKGDLCE FAHGVFESWL HPAQYRTRLC KDETGCX |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022006453.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 1e-123 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A251SLW9 | 0.0 | A0A251SLW9_HELAN; Putative zinc finger, CCCH-type, Ankyrin repeat-containing domain protein | ||||
STRING | XP_004307656.1 | 1e-135 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 1e-124 | C3H family protein |