PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001652
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family bHLH
Protein Properties Length: 292aa    MW: 32122.7 Da    PI: 4.9848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48333568PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-56794PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10152196554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P++      K +Ka++L +  +Y+k L
  Han001652 152 HSIAERLRRERIAERMRALQELVPSC-----NKTDKAAMLDEILDYVKFL 196
                99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-11145201No hitNo description
SuperFamilySSF474595.5E-16145206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.577147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATDPPEGYG DDFLEQILAI PSYNITGCLP VNTADSTGSE TVSVHHQQQP QQQLQPQQFP  60
LGLSLDNGRE TIGGAFAGQQ QQLQQQQRER GGSMNMSGLF PQFENLQSHS LLHTVPQGFQ  120
GQPTSSTAVT VPHPPTIRPR VRARRGQATD PHSIAERLRR ERIAERMRAL QELVPSCNKT  180
DKAAMLDEIL DYVKFLRLQV KVLSMSRLGG AGAVAQLVSD VPLQSVEGDG SENGYNNQQQ  240
GQAAWENWSN DDTEREVAKL MEEDVGAAMQ FLQSKALCIM PISLASLIYP NX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021999026.10.0transcription factor UNE12-like
SwissprotO227688e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A251T5N10.0A0A251T5N1_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGSolyc09g083220.2.11e-119(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]