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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001383 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 309aa MW: 34982.3 Da PI: 8.154 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.6e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+g+++ l ++i +v++yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g++v Han001383 17 LPPGFRFYPTDEELMVRYLCPKVAGNDFAL-RIIGDVNLYKFDPWELPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIMS-EGRKV 114 79*************************999.89***************8777899***************************************.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyrl Han001383 115 GIKKALVFYVGKAPKGSKTNWIMHEYRL 142 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-68 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.899 | 17 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVLRTLPVTD PTTQLKLPPG FRFYPTDEEL MVRYLCPKVA GNDFALRIIG DVNLYKFDPW 60 ELPSKAMFGE KEWYFFSPRD RKYPNGSRPN RVAGSGYWKA TGTDKVIMSE GRKVGIKKAL 120 VFYVGKAPKG SKTNWIMHEY RLSETSRDNN SSRLDDWVLC RIYKKNSSAE KSISGGPSIE 180 QSQGSPTSSS AHFDGGLDSL PAIDDRFLNF NEEDQKVDIR KFDTGNFDWV SLGPFGLPDT 240 VNHPNPPNST SLDPALNMQM KFVKSPEDEV QNEIRSQRME NSGYLFTPDT TDPFAIRYPT 300 QPGSSGYRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-99 | 9 | 171 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-99 | 9 | 171 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-99 | 9 | 171 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-99 | 9 | 171 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-99 | 9 | 171 | 12 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-99 | 9 | 171 | 9 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-99 | 9 | 171 | 9 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022028802.1 | 0.0 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-117 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A251V981 | 0.0 | A0A251V981_HELAN; Putative NAC domain containing protein 19 | ||||
STRING | VIT_19s0014g03290.t01 | 1e-125 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
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