PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han000596
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 523aa    MW: 58757.7 Da    PI: 4.2584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32076258PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-3530PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.5e-54161431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtdeelv +yL++kv gk++++ ++i++vd+ykvePwdLp  +k+k+++ ewyfFs  dkky +g+r+nrat +gyWk+tgkd+ v++ +++
  Han000596  16 LAPGFRFHPTDEELVRYYLRRKVCGKPFRF-DAISDVDVYKVEPWDLPglSKLKSRDLEWYFFSMLDKKYGNGSRTNRATMKGYWKTTGKDRVVHH-RSQ 113
                579**************************9.99***************6448888888************************************99.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kktLv+++grapkge+t+Wvmheyrl
  Han000596 114 QVGMKKTLVYHSGRAPKGERTNWVMHEYRL 143
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-6212166IPR003441NAC domain
PROSITE profilePS5100558.0916166IPR003441NAC domain
PfamPF023651.0E-2718143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MALAIIDSTP PAASSLAPGF RFHPTDEELV RYYLRRKVCG KPFRFDAISD VDVYKVEPWD  60
LPGLSKLKSR DLEWYFFSML DKKYGNGSRT NRATMKGYWK TTGKDRVVHH RSQQVGMKKT  120
LVYHSGRAPK GERTNWVMHE YRLIDQELEK AGILQDAFVL CRIFQKSGSG PKNGEKYGAP  180
FIEEEWEDDE AIFVPKQDDY TEELPVDKDT YLDANDIEQI LKTDMPREDG PLPLIYDGDI  240
SAEVTDGPQK SVVVAGEYEP PVDKTDGSKL FDPSVQTELH VGSVNQGYVG ESSNTMDFGM  300
DFLLDEPYFD ANDGDLPFDD SLFFQADDLK DAVGVDSGLD ILNEYTSLFN PDVDNYQYTF  360
DSFENKNTLP ELMPTFEXDN VYNKIFLFVI NTLVMICFFF MLEYEGRNPS SDDASLPFEG  420
QNDKIAPSSK LPNQETDXSY PFLKKASYML GNISAPPALA AEFPTKYMAS ASXAFSSVNV  480
TLSNVFFNGG VGDLPLGQHA QLNIVLSFGV TGQVTSITSS WEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-5031727174NAC domain-containing protein 19
3swm_B2e-5031727174NAC domain-containing protein 19
3swm_C2e-5031727174NAC domain-containing protein 19
3swm_D2e-5031727174NAC domain-containing protein 19
3swp_A2e-5031727174NAC domain-containing protein 19
3swp_B2e-5031727174NAC domain-containing protein 19
3swp_C2e-5031727174NAC domain-containing protein 19
3swp_D2e-5031727174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976897.10.0NAC domain-containing protein 78
TrEMBLA0A251U3R60.0A0A251U3R6_HELAN; Putative NAC domain containing protein 2
STRINGXP_009599412.11e-151(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-120NAC domain containing protein 2