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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Han000391 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||||||
Protein Properties | Length: 244aa MW: 27787.2 Da PI: 7.3617 | ||||||||||||||||
Description | NAC family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 14 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lp+G+rF+Ptdeelv++yL+ k++g + e+ ++i+evd++k ePwdLp + +++ ++ew+fF+++d+ky++g+r+nrat sgyWkatgkd++++++ ++ Han000391 14 LPVGYRFRPTDEELVNHYLRLKINGCDKEV-SCIREVDVCKKEPWDLPdlSVIESIDNEWFFFCPKDRKYQNGQRSNRATVSGYWKATGKDRTIKTNrGN 112 799************************999.89**************96447788899************************************998567 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g kktLvfy+grapkge+t+Wv+hey + Han000391 113 SVIGKKKTLVFYTGRAPKGERTHWVIHEYCA 143 789**************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-57 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.759 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-26 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEVVPVKSLP IRSLPVGYRF RPTDEELVNH YLRLKINGCD KEVSCIREVD VCKKEPWDLP 60 DLSVIESIDN EWFFFCPKDR KYQNGQRSNR ATVSGYWKAT GKDRTIKTNR GNSVIGKKKT 120 LVFYTGRAPK GERTHWVIHE YCATEKELDG THPGQSPFVL CRLFKKYDGK DENGESGDCV 180 DVDQSDASPL SVVKSSMEEA QSEPGLTRSQ NVQPPTNRIL KTRDYERNGD MLGFYDCQDH 240 GIGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 13 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 13 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 13 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 13 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 13 | 166 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 13 | 166 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 13 | 166 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021987609.1 | 1e-170 | NAC domain-containing protein 62-like isoform X1 | ||||
Refseq | XP_021987610.1 | 1e-170 | NAC domain-containing protein 91-like isoform X2 | ||||
Swissprot | B5X570 | 2e-79 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | A0A251TGU7 | 1e-168 | A0A251TGU7_HELAN; Putative NAC domain-containing protein | ||||
STRING | Migut.F00136.1.p | 1e-89 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 6e-82 | NAC 014 |