PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48762.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 340aa    MW: 37983.8 Da    PI: 6.3994
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48762.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.7e-52141391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF Ptdeel+v+yL++kv+g++++l  +i+evd+yk++Pw Lp k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++
  KHN48762.1  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPGKAAFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRK 110
                 79**************************99.88***************888889************************************9999.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfy g+apkg+kt+W+mheyrl
  KHN48762.1 111 VGIKKALVFYVGKAPKGSKTNWIMHEYRL 139
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6510165IPR003441NAC domain
PROSITE profilePS5100560.55714164IPR003441NAC domain
PfamPF023652.8E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP  60
GKAAFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGSKT NWIMHEYRLL DSSRKHNLGT AKLDDWVLCR IYKKNSSAQK VEANLLAMEC  180
SNGSSPSSSS HVDDMLESLP EIDDRCFTLP RVNSVRTMQQ QDEKFGFQNM GSGFFTDWVN  240
PTDLDSVSEF GSGCQTQGMV NYDCNDLFVP SVPPFGHSHV NYMVGAPPSE EEVQSGVRTQ  300
QADGAACFQQ NPNARLLPGS GDPFGFGFIM GQQVEFGFRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10411704171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10411704171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10411704171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10411704171NO APICAL MERISTEM PROTEIN
3swm_A1e-10411707174NAC domain-containing protein 19
3swm_B1e-10411707174NAC domain-containing protein 19
3swm_C1e-10411707174NAC domain-containing protein 19
3swm_D1e-10411707174NAC domain-containing protein 19
3swp_A1e-10411707174NAC domain-containing protein 19
3swp_B1e-10411707174NAC domain-containing protein 19
3swp_C1e-10411707174NAC domain-containing protein 19
3swp_D1e-10411707174NAC domain-containing protein 19
4dul_A1e-10411704171NAC domain-containing protein 19
4dul_B1e-10411704171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48762.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312160.0KT031216.1 Glycine max clone HN_CCL_3 NAC transcription factor (Glyma12g22880.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304273.10.0NAC domain-containing protein 72
RefseqXP_028192484.10.0NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-128JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A0B2SWZ20.0A0A0B2SWZ2_GLYSO; NAC domain-containing protein 72
TrEMBLA0A0K2CTV00.0A0A0K2CTV0_SOYBN; NAC transcription factor
STRINGGLYMA12G22880.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-117NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]