PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42657.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 557aa    MW: 61430.1 Da    PI: 7.0272
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42657.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  KHN42657.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-11544No hitNo description
CDDcd002021.41E-16653No hitNo description
Gene3DG3DSA:3.30.50.101.8E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.3E-14741IPR000679Zinc finger, GATA-type
PfamPF139193.2E-11297378IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLAKYTPLHA RAETDDYDDQ  60
RVSRVKSISI NKKKEVALLK RKQNHDNVVS GGFAPDYNQG YQKVVDEDIS NRSSSGSAIS  120
NSESCAQFGY GGMDASDLTG PAQSVVWDAM VPSRKRTCVG RPKPSSVEKL TKDLCTILHE  180
QQSYFSVSSE EDLLFESDTP MVSVEIGHGS ILIRHPSYIA REEESEASSL SVDNKQCPMS  240
EAYSFSGAIA MHNDSSRLKS SSLEVEKIGN STGQGMQQEQ LKRHAFVHCD KSQLERVQIL  300
GNHESPLCSI DLNDVVNYEE FLRILTNEEQ QQLLKLLPVV DTAKLPDSLE VMFSSSQFKE  360
NLTYFQQLLA EGVFDISLLG AKSEDCKILK RLALSNLSKS KWVAHHNFLK KCKNKAGKSN  420
TMGSTGTTST NVLNNRASTD VANIKRMRDS RNQNLPEIKT IMRSPKRTIA KASCEGKEAV  480
EDGACYSPKH LFALPPDASF LLLDSLNFVQ ESSDQDLLLE VSSNTSFPQA ELLQPTLSLG  540
AQASTSSSSI YSNLVHH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-150AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517400.10.0GATA transcription factor 26
RefseqXP_028245864.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-148GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A445M5V60.0A0A445M5V6_GLYSO; GATA transcription factor 26
TrEMBLI1J9R10.0I1J9R1_SOYBN; Uncharacterized protein
STRINGGLYMA01G41370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-148GATA transcription factor 26
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]