PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40025.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 590aa    MW: 65742.7 Da    PI: 4.638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40025.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52211471127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeel+++yL+ k++g++ ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++s ++
  KHN40025.1  21 LPLGFRFRPTDEELIDYYLRSKINGNSDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRRIKS-GS 117
                 699************************999.89**************96447777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                 +l+g+kktLvfy+grapkg++t+Wvmheyr
  KHN40025.1 118 TLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 147
                 *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6114171IPR003441NAC domain
PROSITE profilePS5100556.3821171IPR003441NAC domain
PfamPF023651.4E-2722147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGAVVECYPP PRTAVLSLNT LPLGFRFRPT DEELIDYYLR SKINGNSDDV WVIREIDVCK  60
WEPWDLPDLS VVRNKDPEWF FFCPQDRKYP NGHRLNRATS HGYWKATGKD RRIKSGSTLI  120
GMKKTLVFYT GRAPKGKRTN WVMHEYRPTL KELEGTNPGQ NPYVLCRLFK KQDESLEASN  180
GDDVERTAST PTTANYSPDE IQSDSALVPA SSSQATEDDK PLPVISENSE EAISNIITPG  240
DIHSDECDAP DAQYQIVEPV AEEDQLLSVD IFYDPTNQQL DDKLFSPVHA HLPADFYYQA  300
NNQSELQYGT SENISEFFDS VVNWDSFSYA TSSLDLGSSF LNPKDNGSGS DSDVEMANML  360
HLQALHDYPK EAVEEKFNVG LFQNNPQMAF SNDGPMGQVH NVANYCEQPR NFDAFVNGDT  420
GIRIRTRHGR NEQPNMNMMI QSQGIAPRRI RLGVVRRPLG SQETAKDGSC ACAPEDHNSK  480
TIISAEKKAS ENHAADESST VSDESSTVTD DSDEPEEASP KSTDPRKISQ QHVATAESIS  540
GSKDLLVSRR GCYTSKVSSN CATWSYVLAV SATVLVSAIL LVNIWAYVRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-451617512169NO APICAL MERISTEM PROTEIN
1ut4_B8e-451617512169NO APICAL MERISTEM PROTEIN
1ut7_A8e-451617512169NO APICAL MERISTEM PROTEIN
1ut7_B8e-451617512169NO APICAL MERISTEM PROTEIN
3swm_A1e-441617515172NAC domain-containing protein 19
3swm_B1e-441617515172NAC domain-containing protein 19
3swm_C1e-441617515172NAC domain-containing protein 19
3swm_D1e-441617515172NAC domain-containing protein 19
3swp_A1e-441617515172NAC domain-containing protein 19
3swp_B1e-441617515172NAC domain-containing protein 19
3swp_C1e-441617515172NAC domain-containing protein 19
3swp_D1e-441617515172NAC domain-containing protein 19
4dul_A8e-451617512169NAC domain-containing protein 19
4dul_B8e-451617512169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5690450.0JX569045.1 Glycine max NAC transcription factor (NAC012) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200361.10.0protein NTM1-like 9
TrEMBLA0A445H7T30.0A0A445H7T3_GLYSO; Protein NTM1-like 9 isoform A
STRINGGLYMA14G36840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.16e-99NAC transcription factor-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]