PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36794.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 347aa    MW: 39122.9 Da    PI: 7.4947
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36794.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-49141431128
         NAM   1 lppGfrFhP....tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 lppGfrF P    tdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ 
  KHN36794.1  14 LPPGFRFYPtdepTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT- 110
                 79*****862211578****************99.88***************7777799***********************************9999. PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  KHN36794.1 111 EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 143
                 999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6310166IPR003441NAC domain
PROSITE profilePS5100555.35414166IPR003441NAC domain
PfamPF023651.1E-2315143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGVPEKDPLS QLSLPPGFRF YPTDEPTDEE LLVQYLCRKV AGHHFSLPII AEIDLYKFDP  60
WVLPSKAIFG EKEWYFFSPR DRKYPNGSRP NRVAGSGYWK ATGTDKIITT EGRKVGIKKA  120
LVFYIGKAPK GTKTNWIMHE YRLLDSSRKN TGTKLDDWVL CRIYKKNSSA QKTAQNGVVP  180
SNEHTQYSNG SSSSSSSQLE DVLESLPSID ERCFAMPRVN TLQQQQHHEE KVNVQNLGAG  240
GLMDWTNPSV LNSVADFASG NNQVVQDQTQ GMVNYNCNDL YVPTLCHLDS SVPLKMEEEV  300
QSGVRNQRVG NNNSWFLQND FTQGFQNSVD TCGFKYPVQP VGFGFRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10711724171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10711724171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10711724171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10711724171NO APICAL MERISTEM PROTEIN
3swm_A1e-10711727174NAC domain-containing protein 19
3swm_B1e-10711727174NAC domain-containing protein 19
3swm_C1e-10711727174NAC domain-containing protein 19
3swm_D1e-10711727174NAC domain-containing protein 19
3swp_A1e-10711727174NAC domain-containing protein 19
3swp_B1e-10711727174NAC domain-containing protein 19
3swp_C1e-10711727174NAC domain-containing protein 19
3swp_D1e-10711727174NAC domain-containing protein 19
4dul_A1e-10711724171NAC domain-containing protein 19
4dul_B1e-10711724171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36794.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619240.0EU661924.1 Glycine max NAC domain protein (NAC27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238221.20.0NAC transcription factor NAC27
RefseqXP_028191254.10.0NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-133JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A445IB280.0A0A445IB28_GLYSO; NAC domain-containing protein 55
TrEMBLI1M3B90.0I1M3B9_SOYBN; NAC transcription factor
STRINGGLYMA13G35550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-119NAC domain containing protein 3
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]