PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28468.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 510aa    MW: 56532.4 Da    PI: 6.4503
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28468.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504e-16741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  KHN28468.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-11546No hitNo description
CDDcd002024.03E-17655No hitNo description
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.6E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.2E-8258345IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENVDYEDQ  60
KVSRVKSISL NKNKEVKLAK RKQNYDNAAS GGFVPDYSQG YQKVVDEDTS NRSSSGSAVS  120
NSESCAQFGG PDASDLTGPA QSVVWDAMVP SKKRTCAGRP KPSSVEKLTR DLCTILHEQQ  180
SYFSASSEED LLFESDTPMV SVEIGHGSIL IRHPSSIARD EESEASSLSV DNKQCLMNEA  240
YSFSSTIPMD KSQLEKLQVP GNHDSPLCSI DLNDVVNYEE FMRNLTNEEQ QQLLKYLPVV  300
DTAKFPDSLR NMFNSFQFKE NLIYFQQLLG EGVFDISLLG AKPEEWKTLK RLALSNLSKS  360
KWVEHYNFLK KCENKSGKSI GLGSTAMESS YVTTAKRMRE HDSQNQNFPE LKTTMRSPKR  420
VFIKPSCEVK EVVEEGSSFS PKSLFALPHG VGSLHMLDSF NFVGESSEDL LLEVPSNSSF  480
PQAELLHPSL SYGAQVSTTS SSVHSLVTHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-146AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524128.10.0GATA transcription factor 26
RefseqXP_028231829.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-147GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0B2R9460.0A0A0B2R946_GLYSO; GATA transcription factor 26
STRINGGLYMA05G05320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-149GATA transcription factor 26
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]