PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G248600.1

Common Name

B456_010G248600, LOC105772592

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 410aa MW: 46078.9 Da PI: 6.3349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G248600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.8	1.8e-25	292	376	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aL+ +r+ +e+++ + +k W+e+s+ m g++rs+k+Ckekwen+nk+++k + kk+ e+s++c+yf++l+ Gorai.010G248600.1 292 RWPDAEVQALVMLRSTLEHKFHITGSKCSIWDEISAGMYNMGYSRSAKKCKEKWENINKYFRKSMGSGKKH-HENSKRCAYFHDLD 376 8****************************************************************9998.78888*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.922	285	349	IPR017877	Myb-like domain
Pfam	PF13837	9.4E-18	291	377	No hit	No description
CDD	cd12203	1.73E-23	291	355	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MELFTGGREA FPQHVTPFPD LTAIMEPAED LMMSDHRPTL PPRKLRPIRY NGRSPASSQA 60 EDHSEFAEAV ELVGDEVCAI NGSSFDYLTP PIKAEVGDVT ATVGGGGSGV EGPPSSEQRG 120 EPSGSSSSDS DDDLSATGNE PLKKRKRKSR KKIKLFLEKL VMKVMDKQEQ MHKQLMEMIE 180 KREKERLIRE EAWKRQEMER VKRDEEARAQ EMSRSIALIS FIQNALGHEI EIPISTMSCM 240 EENGFKDASE DHIQKDTVNP IGPTNRWQEG MMQANGAENH EGGVSCDPNN RRWPDAEVQA 300 LVMLRSTLEH KFHITGSKCS IWDEISAGMY NMGYSRSAKK CKEKWENINK YFRKSMGSGK 360 KHHENSKRCA YFHDLDVLYK NGFGNPVNHI NCIKVDNMDN GESLKGNEG*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MELFTGGREA FPQHVTPFPD LTAIMEPAED LMMSDHRPTL PPRKLRPIRY NGRSPASSQA  60
EDHSEFAEAV ELVGDEVCAI NGSSFDYLTP PIKAEVGDVT ATVGGGGSGV EGPPSSEQRG  120
EPSGSSSSDS DDDLSATGNE PLKKRKRKSR KKIKLFLEKL VMKVMDKQEQ MHKQLMEMIE  180
KREKERLIRE EAWKRQEMER VKRDEEARAQ EMSRSIALIS FIQNALGHEI EIPISTMSCM  240
EENGFKDASE DHIQKDTVNP IGPTNRWQEG MMQANGAENH EGGVSCDPNN RRWPDAEVQA  300
LVMLRSTLEH KFHITGSKCS IWDEISAGMY NMGYSRSAKK CKEKWENINK YFRKSMGSGK  360
KHHENSKRCA YFHDLDVLYK NGFGNPVNHI NCIKVDNMDN GESLKGNEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	KKRKRK
2	142	150	KKRKRKSRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449412.1	0.0	PREDICTED: trihelix transcription factor GT-2 isoform X1
TrEMBL	A0A0D2UIR8	0.0	A0A0D2UIR8_GOSRA; Uncharacterized protein
STRING	Gorai.010G248600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G248600.1
Entrez Gene	105772592

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]