PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G245200.1
Common NameB456_010G245200, LOC105774081
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 339aa    MW: 37406.7 Da    PI: 6.2291
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G245200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.38.9e-10445439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        + C+ +++  ++lfC+ ++ +lC++C +++H        H +
  Gorai.010G245200.1  4 KLCDSCKSATATLFCRPDSAFLCPNCDSKIHAAnklasrHAR 45
                        68*****************************65566666655 PP
2zf-B_box27.46.9e-094791442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ +e+ +++  C+ +   lC +C   +H++      H++vpl
  Gorai.010G245200.1 47 LVCEVCEQAPAHVTCKADAAALCVTCDRDIHSSnplarrHERVPL 91
                        68*****************************77999999*99986 PP
3CCT68.81.4e-23275318144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Gorai.010G245200.1 275 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRS 318
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48148IPR000315B-box-type zinc finger
SMARTSM003362.6E-13148IPR000315B-box-type zinc finger
PfamPF006434.2E-7445IPR000315B-box-type zinc finger
CDDcd000218.34E-8548No hitNo description
PROSITE profilePS5011911.3054491IPR000315B-box-type zinc finger
PfamPF006436.2E-74791IPR000315B-box-type zinc finger
CDDcd000213.45E-84891No hitNo description
SMARTSM003364.6E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.618275317IPR010402CCT domain
PfamPF062032.4E-17275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRP DSAFLCPNCD SKIHAANKLA SRHARVLVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSSN PLARRHERVP LAPFYDSVKP NTAFNFLDDR YLSDVDGDAD  120
SSREEAEAAS WLLPNPNHKA HESPDVNTGQ YVFPEMDPYL DLDYGHVDPK IETQDQEQNS  180
SGTDGVVPVQ SNTVQAPMVN DHCFDMEFTT PKALPYGYNY NCNYNPHCLS HSVSSSSLDV  240
GVVPDGGSTI TDISVPCAKV TETTHQAVQL SSAEREARVL RYREKRKNRK FEKTIRYASR  300
KAYAEVRPRI KGRFAKRSDV EVEVDGGNMY GFGVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3440.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183340.0JQ618334.1 Gossypium hirsutum constans-like protein 4-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451874.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-146COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D2VES70.0A0A0D2VES7_GOSRA; CONSTANS-like 3 protein
STRINGGorai.010G245200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-134CONSTANS-like 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]