PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G171500.1

Common Name

B456_010G171500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 347aa MW: 38700.8 Da PI: 8.5764

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G171500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.8	1.2e-17	27	118	2	86
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt +e+++Liea++ ++er rgk + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ + + + Gorai.010G171500.1 27 WTVSETMVLIEAKKMDDERRMkkswegegRGKPTELRWKWVEDYCWRRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAEDNQGSYWE 116 ************66666552222222246799***************************************98.5777778888888 PP trihelix 85 le 86 +e Gorai.010G171500.1 117 ME 118 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.062	19	91	IPR017877	Myb-like domain
Pfam	PF13837	7.8E-13	26	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGVAGTLTMA DQGGNNIGMR EYRKGNWTVS ETMVLIEAKK MDDERRMKKS WEGEGRGKPT 60 ELRWKWVEDY CWRRGCLRSQ NQCNDKWDNL MRDYKKVREY QRRTAGAEDN QGSYWEMEKN 120 ERKEKNLPTN MLRQIYECLE EVVEKKGGQR VVLPATATAS GSLPIPNIPD VMDRPIASVQ 180 LPPILQHQLP PIPAAVPLPL TALPQLPQPA AAPTPLLQPP FSYAQPLPTV DSDTSEYSDS 240 LAKRRRRSGG NWEGTSSGAA TANNSNEAGT AISKSASIIA EAIQASEENE ERRHRDLVSL 300 HERILKIEES KTEINKRGID GLVDAINKLA NSILAFASHK NQSAPK*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGVAGTLTMA DQGGNNIGMR EYRKGNWTVS ETMVLIEAKK MDDERRMKKS WEGEGRGKPT  60
ELRWKWVEDY CWRRGCLRSQ NQCNDKWDNL MRDYKKVREY QRRTAGAEDN QGSYWEMEKN  120
ERKEKNLPTN MLRQIYECLE EVVEKKGGQR VVLPATATAS GSLPIPNIPD VMDRPIASVQ  180
LPPILQHQLP PIPAAVPLPL TALPQLPQPA AAPTPLLQPP FSYAQPLPTV DSDTSEYSDS  240
LAKRRRRSGG NWEGTSSGAA TANNSNEAGT AISKSASIIA EAIQASEENE ERRHRDLVSL  300
HERILKIEES KTEINKRGID GLVDAINKLA NSILAFASHK NQSAPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589902	3e-68	JX589902.1 Gossypium hirsutum clone NBRI_GE24692 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452807.1	0.0	PREDICTED: uncharacterized protein LOC105774776
TrEMBL	A0A0D2VBL5	0.0	A0A0D2VBL5_GOSRA; Uncharacterized protein
STRING	Gorai.010G171500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-75	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G171500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]