PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G096900.1

Common Name

B456_010G096900, LOC105774416

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 459aa MW: 51937.6 Da PI: 8.1187

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G096900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.5	2.9e-31	340	424	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r ++e ++r+ lk+p Weevs++m++ g++rs+k+Ckekwen+nk+++k ke+ kkr +++s+tc yf+ql+ Gorai.010G096900.1 340 RWPRAEVEALIQVRCDLEAKFREPGLKGPVWEEVSSFMASLGYQRSAKRCKEKWENINKYFRKSKENGKKR-CRHSKTCTYFHQLD 424 8*****************************************************************997.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.771	337	397	IPR017877	Myb-like domain
Pfam	PF13837	6.2E-21	339	426	No hit	No description
CDD	cd12203	6.33E-27	339	404	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MQPVKYGAQN LQERLMEEDG YSSVFSISNP LHCQQLFQQN MGPLTHQLLL HQHQFQQPNS 60 AVGFKLGLDE ISMKKEAALA LNHPQQNGND QHSLLAPHCW HPQEDSPIKQ PFWKSLNRCD 120 EDSIRQCTSE RSKHLDNRYR FFGELEAIYG LGGETTQAGS GSALTGENYS PANVGIPMPS 180 AEFQGHNVGA NGRGDNVTTG VDHGSEGSIG EQASLRKIQK KKRKKKMKEQ LCSMLVFFET 240 LVKQVMDHQE GLHKRFLEVI ETMDKERSAK EESWRQREAE KRKNEAIARA NEQALASNRE 300 AVIVSYLEKL TGQSINLPPR TPLLVQPESA IVPLNDNNSR WPRAEVEALI QVRCDLEAKF 360 REPGLKGPVW EEVSSFMASL GYQRSAKRCK EKWENINKYF RKSKENGKKR CRHSKTCTYF 420 HQLDQLYSRM LPTTCPTSPP SPLINNDIDL PETELGAA*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MQPVKYGAQN LQERLMEEDG YSSVFSISNP LHCQQLFQQN MGPLTHQLLL HQHQFQQPNS  60
AVGFKLGLDE ISMKKEAALA LNHPQQNGND QHSLLAPHCW HPQEDSPIKQ PFWKSLNRCD  120
EDSIRQCTSE RSKHLDNRYR FFGELEAIYG LGGETTQAGS GSALTGENYS PANVGIPMPS  180
AEFQGHNVGA NGRGDNVTTG VDHGSEGSIG EQASLRKIQK KKRKKKMKEQ LCSMLVFFET  240
LVKQVMDHQE GLHKRFLEVI ETMDKERSAK EESWRQREAE KRKNEAIARA NEQALASNRE  300
AVIVSYLEKL TGQSINLPPR TPLLVQPESA IVPLNDNNSR WPRAEVEALI QVRCDLEAKF  360
REPGLKGPVW EEVSSFMASL GYQRSAKRCK EKWENINKYF RKSKENGKKR CRHSKTCTYF  420
HQLDQLYSRM LPTTCPTSPP SPLINNDIDL PETELGAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	223	LRKIQKKKRK
2	218	225	QKKKRKKK
3	219	225	KKKRKKK
4	220	224	KKRKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452359.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A0D2SQA1	0.0	A0A0D2SQA1_GOSRA; Uncharacterized protein
STRING	Gorai.010G096900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16469	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-51	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G096900.1
Entrez Gene	105774416

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]