PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G197300.1

Common Name

B456_009G197300, LOC105771209

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 312aa MW: 34381 Da PI: 8.3092

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G197300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.9	3.2e-69	86	246	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskk 82 r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++++++++++++l ++ Gorai.009G197300.1 86 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQTQQQQQQQNQQQEHQQLfrgdnpkrqrDNHG 176 7899****************************************************999999987777777777677777766322344 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +l++t+ls ++ + le ++P+evss+avfrcv+vs++dd e e+aYqtav+i+GhvfkGiLyd+G+e+ Gorai.009G197300.1 177 SPSLACTRLSPTT--SGLELGQFPPEVSSPAVFRCVKVSAMDDVEGEFAYQTAVNIAGHVFKGILYDRGPES 246 4455666665554..5688899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-66	89	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.7E-27	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-25	196	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAGFFYLGGR EGAASGKQEG ENKEENLYFY RNEEIYNKGF EIWPQYYYQQ QNVNNLSFGA 60 GPSRRTTGFN LSDESSSRSA GFTVMRQGGM NCQDCGNQAK KDCAHLRCRT CCKSRGFQCQ 120 THVKSTWVPA AKRRERQQQL AALQQTQQQQ QQQNQQQEHQ QLFRGDNPKR QRDNHGSPSL 180 ACTRLSPTTS GLELGQFPPE VSSPAVFRCV KVSAMDDVEG EFAYQTAVNI AGHVFKGILY 240 DRGPESRYTS GGESSQQLNL ITTASTTAAA ATTTTTATTS DPGTSMIDPS LYPAPLNAFI 300 AGTQFFPPPR S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394263	1e-76	GQ394263.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1228 SSR marker CGR6822 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448074.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	4e-98	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D2S4J4	0.0	A0A0D2S4J4_GOSRA; Uncharacterized protein
STRING	Gorai.009G197300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-85	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.009G197300.1
Entrez Gene	105771209

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]