PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G065600.1
Common NameB456_009G065600, LOC105768672
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 336aa    MW: 36982.2 Da    PI: 6.6619
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G065600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.3e-09436436
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                        + C+ +++  ++lfC+ ++ +lC +C +++H  
  Gorai.009G065600.1  4 KLCDSCKSATATLFCRADSAFLCSNCDSKIHAA 36
                        68*****************************54 PP
2zf-B_box24.55.6e-084690341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         ++C+ +e+ +++  C+ +   lC +C   +H+       H++ p
  Gorai.009G065600.1 46 VWVCEVCEQAPAHVTCKADAAALCITCDRDIHSAnplasrHERLP 90
                        689*****************************6688888898876 PP
3CCT69.49.4e-24272315144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Gorai.009G065600.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 315
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.779148IPR000315B-box-type zinc finger
PfamPF006431.2E-6443IPR000315B-box-type zinc finger
CDDcd000211.72E-9548No hitNo description
PROSITE profilePS5011910.5524491IPR000315B-box-type zinc finger
PfamPF006431.7E-64691IPR000315B-box-type zinc finger
CDDcd000214.20E-84791No hitNo description
SMARTSM003361.8E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658272314IPR010402CCT domain
PfamPF062031.5E-17272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCSNCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCI TCDRDIHSAN PLASRHERLP VTPFYDSVNS VPAVKPNGVV KFLEERYFSD  120
VDGDADVSRE EAEAASWLLP NPNHKAVDSP DVNSGQYVFS EMDPFLDLDY GHGDPKMDAR  180
EQNSSGTDGV VPVQSKNVQA PSANDHCFDL DFTGSKSFSY GYNPNFISHS VSSSSLDVGV  240
VPDGSTMTDI SNPYGRGPES THQTVQLSPA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AEMRPRIKGR FAKRTDIEVE VDRSNMYGFG VVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183320.0JQ618332.1 Gossypium hirsutum constans-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444197.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-149COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D2RV900.0A0A0D2RV90_GOSRA; CONSTANS-like 5 protein
STRINGGorai.009G065600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-147CONSTANS-like 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]