PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G094200.1

Common Name

B456_007G094200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 339aa MW: 35440.4 Da PI: 9.539

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G094200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.7	7e-37	67	166	1	103
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + + + s +a Gorai.007G094200.1 67 AAPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTS--NA 153 689**************************************************************7777744421..1111111111..11 PP TCP 91 aksaakskksqks 103 +++ ++k++++ Gorai.007G094200.1 154 NPEPGDPSKKKHK 166 1111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.4E-30	73	163	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.421	74	128	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MAAIHKLEVE EDADPRAVVL SINGGGDAAP SKNPKEEPDI DTTLGAMPTA VHVPSGVPVP 60 PVTAAPAAPK RASTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLEH 120 AEPAIIAATG TGTVPAIAMS VNGTLKIPTT SNANPEPGDP SKKKHKRPAN SEYVDINDAV 180 SVSSGLAPVV TPQQQQQQQA AVLPQGLVPI WAIPSNTVVP GAFFMVPPMA SMAGPSTQPH 240 IFTFPATATP VINISARPIS SFVSAMQAAT PSQLQSNVAV TSCTVPVSKA AKTTSVMAPS 300 SSSAASATTT TTTQMLRDFS LEIYDKQELQ FMTRSSKH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489844.1	0.0	PREDICTED: transcription factor TCP9
Refseq	XP_016695435.1	0.0	PREDICTED: transcription factor TCP9
Swissprot	O64647	5e-96	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A0D2SH07	0.0	A0A0D2SH07_GOSRA; Uncharacterized protein
STRING	Gorai.007G094200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-79	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G094200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]