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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G243900.1 | ||||||||
Common Name | B456_002G243900, LOC105786380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 438aa MW: 49886.3 Da PI: 5.7433 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.2 | 5.1e-24 | 91 | 198 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++e+ +k Gorai.002G243900.1 91 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkggggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNEILGK 181 7**************9888887766667888999999999*************************************************** PP trihelix 71 r.tsessstcpyfdqle 86 + ++e++++ +++++++ Gorai.002G243900.1 182 GtACEVVENQRLLESMD 198 *55**********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.2E-22 | 89 | 223 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQQHPQVVAY AHHETQHVKQ GYHPFGSKPK 60 QISTISDEDE PGFTLDDGGS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN 120 DPSGKKKGGG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNEILG 180 KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP 240 PQMQQRCLHS SDNAQIGGNP AGGSTETLKL EESDDEDDDD DDDESDGDDD DDDDETMDGH 300 DEDQNVENSS RKRPRKGGVS PSMQQLSNEV TKVIQDGSKN SWEKKHWLKM KLMQLEEQEV 360 SYQCEAFELE KQRLKWVKFS GKKEREMEKS KLENQRKRLE NERMVLIVRQ QELELVDMSD 420 VRQHASNKRG DLSSFTS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX623081 | 0.0 | JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468221.1 | 0.0 | PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X1 | ||||
Refseq | XP_012468222.1 | 0.0 | PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X2 | ||||
TrEMBL | A0A0D2NSB0 | 0.0 | A0A0D2NSB0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G243900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6762 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 1e-104 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G243900.1 |
Entrez Gene | 105786380 |
Publications ? help Back to Top | |||
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