PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G233700.1

Common Name

B456_001G233700, LOC105804734

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 268aa MW: 30909.7 Da PI: 6.2812

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G233700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.8	1.9e-20	17	103	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+l Li+a++e++ +l+rg+lk+++Weev+ + + +++ qC++k+e+l++ry+ ++++ ++ s +py+d +e Gorai.001G233700.1 17 WTHPETLNLIQAYQEKWYSLQRGQLKANQWEEVAVTVatrcglFDDSAAKTALQCRHKMEKLRRRYRSERQNLGSA-----SPWPYYDAME 102 ***********************************999999889999*********************84.....57*****8 PP trihelix 87 a 87 a Gorai.001G233700.1 103 A 103 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	16	104	No hit	No description
SMART	SM00595	3.3E-7	24	109	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSYDPSPAAK KPQSLPWTHP ETLNLIQAYQ EKWYSLQRGQ LKANQWEEVA VTVATRCGLF 60 DDSAAKTALQ CRHKMEKLRR RYRSERQNLG SASPWPYYDA MEALEQGPLP ISARPLTSIV 120 PNGHEAGNYY HNDDENNPIE EEEEDDEEHE GGNRFSKSRS INYILRRPSV VNRFSGLMKK 180 RVRTEEEGDG DAAITGKGEE DKGVELAMEI RRFADRFMRM ERKKMEIMHE TERLRKEMEN 240 KRIEMILNSE KKIVDAISTS LGSQTKE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243113	0.0	AC243113.1 Gossypium raimondii clone GR__Ba0039D03-hoc, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492903.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A0D2NDA3	0.0	A0A0D2NDA3_GOSRA; Uncharacterized protein
STRING	Gorai.001G233700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-66	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G233700.1
Entrez Gene	105804734

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]