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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ56544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | HB-other | ||||||||
Protein Properties | Length: 344aa MW: 37860.4 Da PI: 6.2473 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 19 | 61 | 2 | 44 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 ++R + t+ q e+Le+ ++ n++ps e+r+ L +++gLte+ V KXZ56544.1 19 KPRAQKTPLQKEVLEASYQLNQHPSIEHRKALGDRIGLTEQEV 61 899*************************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-7 | 11 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-12 | 13 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.2E-7 | 19 | 61 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.71E-6 | 20 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEQPEPLLGA ADAKAKASKP RAQKTPLQKE VLEASYQLNQ HPSIEHRKAL GDRIGLTEQE 60 VALAAASGAV SGGGGSALSQ PTAGEEETED GDAEYDEAAA AAWDGFRALC TAARASLPVP 120 YREDGPPLGY LFDDPGEPDR VPGGGGGGGR KRRRIVLAGD VVEADDEVVK SVLLRKPAGE 180 KPGLPGSAPV GVMTQAELEM RRRELALQQQ MLAQQQLAAA AAAAGAGGDP ADPDFGAGRS 240 RAEDAVRREQ ERLRRELAKH SEKLERDRRR DEEERHRELE RGEKERRKLV DKLEKERAKE 300 EARKLKEMEK MKIAEERELR RLEAAREKER KAEERRRAVE ERKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 153 | RKRRR |
2 | 150 | 154 | KRRRI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002958970.1 | 5e-67 | homeodomain protein | ||||
TrEMBL | A0A150H3C1 | 0.0 | A0A150H3C1_GONPE; Uncharacterized protein | ||||
STRING | XP_002958970.1 | 2e-66 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5105 | 8 | 8 |