PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ54259.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family HSF
Protein Properties Length: 729aa    MW: 73747.2 Da    PI: 4.9755
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ54259.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.5e-34111032103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sw ++g sfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ l+ i+
    KXZ54259.1  11 FLIKTYDLVDDPTTDNIVSWGADGCSFVVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFMRGRKDALRGIH 98 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    KXZ54259.1  99 RRKPS 103
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-37494IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-587100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-347100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.5E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2911100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MTNPSAQPPP FLIKTYDLVD DPTTDNIVSW GADGCSFVVW KPPEFARDLL PKHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FANEHFMRGR KDALRGIHRR KPSSTTHNSH VSQSNAGGSS  120
AGVANGAAVA GAPHSTALVA AGAVAPAIEI GAYGGFREEI DNLKRDKNVL MVELVRLRQQ  180
QQSTDGKMRE LQARLEATEA KQQTMINMFA AAFKNPAMFQ RMISSVATGG MQRLANAPAY  240
PSAGAANGPV GRKKRRARGE SLDVDLGGPG GGVGISEAID ADMAENVIIG TAGSPIGAGA  300
GADDTSSNGS ASGAVGGASS GAACPGASSS SQQQQQQQLV QYNPGGAAGS HDALSDLMLR  360
SFQSLLSTAE DPTGDVTGAF NSLAIGAQGL GVGAGVPSVT IQEQPSAPTP LVPTQPMLPV  420
SAPGPSHGGV VTASGPNLMA AAVPLGLPLT STAIQPYQGP PGPLSLSLPP PHTAGHPAAA  480
GGAATVAGGP VPLVPVPGVV PELSDPSEAL LVPPQVESLA QPGAMPHLVP VQVAGPLDAG  540
VVQLPNGIAP VGTPVLPGTT ATPPPFLNPS SPALVPTPAA VPGVSAAPIG SGPHPHTMIP  600
IQTATMAPPT QSMAAGLPAP TGLPAIGAAT LAAGLGMQLP PPLPVNDNPT VSSPDDCEDD  660
AMGMPVDLMH SLHTMTSGEL VLPADSDFAD DVWAQLMSAS SAQPPADGSH GLGLGLGLDM  720
REISTVLED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-2391008110Heat shock factor protein 1
5hdn_A4e-2391008110Heat shock factor protein 1
5hdn_B4e-2391008110Heat shock factor protein 1
5hdn_C4e-2391008110Heat shock factor protein 1
5hdn_D4e-2391008110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251257RKKRRAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002955685.10.0heat shock transcription factor
TrEMBLA0A150GWS80.0A0A150GWS8_GONPE; Uncharacterized protein
STRINGXP_002955685.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.17e-68heat shock transcription factor A1D