PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G166800.1.p

Common Name

GLYMA_20G166800, LOC100799041

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 631aa MW: 71231.9 Da PI: 5.7514

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G166800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2.1e-29	68	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeev++k++e g++rs+k+Ckek+en+ k++k++ke++++++ + +t+++fdql+ Glyma.20G166800.1.p 68 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKH--EGKTYKFFDQLQ 151 8******************************************************************964..4557****98 PP
2	trihelix	100.4	1.5e-31	444	529	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e +++++ k+p We++s+ m + g++rs+k+Ckekwen+nk++kk+ke++k+r e+s+tcpyf++lea Glyma.20G166800.1.p 444 RWPKTEVHALIRLRTSLEAKYQENGPKAPFWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 529 8*******************************************************************8.78999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.009	65	127	IPR001005	SANT/Myb domain
CDD	cd12203	1.77E-23	67	132	No hit	No description
PROSITE profile	PS50090	7.05	67	125	IPR017877	Myb-like domain
Pfam	PF13837	4.0E-20	67	153	No hit	No description
PROSITE profile	PS50090	7.224	437	501	IPR017877	Myb-like domain
SMART	SM00717	0.14	441	503	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-21	443	530	No hit	No description
CDD	cd12203	1.00E-25	444	508	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MELIGDTTTV METSSGEAVA AHDGGEVIMM DANSGEEENN NKGEEGEEEE EGDNKINSNN 60 NSLCGGNRWP RQETLALLKI RSDMDAVFRD SSLKGPLWEE VARKLSELGY HRSAKKCKEK 120 FENVYKYHKR TKESRSGKHE GKTYKFFDQL QALENQFTVS YSPKPQPTLA TTTNIITLPP 180 PTRPSDTTAI SYVTTTVPST NPTIISPSPQ PPTHATTTTT ITSPTVATNP KNPPQSNNNS 240 NIPNYSLLNM NNLFSTTSTS SSTASDEDLE EKYRKKRKWK DYFRRLTRQV LAKQEEMQKR 300 FLEAIDNRER EQVAQQEAWR IQEMARINRE HELLVQERST AAAKNAAVIA FLQQLSGQHQ 360 NSTTTKAGAN FLQQPLPQQV QPPPQQAPQP LMMSNNNNIE IQKMNNGHSV VAAATPTTVV 420 AATAIATTAV TTTPSSLSSL SSSRWPKTEV HALIRLRTSL EAKYQENGPK APFWEDISAG 480 MLRLGYNRSA KRCKEKWENI NKYFKKVKES NKQRREDSKT CPYFHELEAL YKEKSKTTQN 540 PFGASFHNMK PHEMMEPLMV QPEQQWRPPT QYEQGAAKEN NNSERKEREE EEEEEDDDEN 600 EEGDLESVED EGGNRYEIAT NKLSSVDTVE *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MELIGDTTTV METSSGEAVA AHDGGEVIMM DANSGEEENN NKGEEGEEEE EGDNKINSNN  60
NSLCGGNRWP RQETLALLKI RSDMDAVFRD SSLKGPLWEE VARKLSELGY HRSAKKCKEK  120
FENVYKYHKR TKESRSGKHE GKTYKFFDQL QALENQFTVS YSPKPQPTLA TTTNIITLPP  180
PTRPSDTTAI SYVTTTVPST NPTIISPSPQ PPTHATTTTT ITSPTVATNP KNPPQSNNNS  240
NIPNYSLLNM NNLFSTTSTS SSTASDEDLE EKYRKKRKWK DYFRRLTRQV LAKQEEMQKR  300
FLEAIDNRER EQVAQQEAWR IQEMARINRE HELLVQERST AAAKNAAVIA FLQQLSGQHQ  360
NSTTTKAGAN FLQQPLPQQV QPPPQQAPQP LMMSNNNNIE IQKMNNGHSV VAAATPTTVV  420
AATAIATTAV TTTPSSLSSL SSSRWPKTEV HALIRLRTSL EAKYQENGPK APFWEDISAG  480
MLRLGYNRSA KRCKEKWENI NKYFKKVKES NKQRREDSKT CPYFHELEAL YKEKSKTTQN  540
PFGASFHNMK PHEMMEPLMV QPEQQWRPPT QYEQGAAKEN NNSERKEREE EEEEEDDDEN  600
EEGDLESVED EGGNRYEIAT NKLSSVDTVE *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.30276	0.0	cotyledon\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G166800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606164.1	0.0	trihelix transcription factor GT-2
Swissprot	Q39117	1e-143	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	I1NH22	0.0	I1NH22_SOYBN; Uncharacterized protein
STRING	GLYMA20G30650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-50	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G166800.1.p
Entrez Gene	100799041