PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G149000.1.p
Common NameGLYMA_19G149000, LOC100810885
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 293aa    MW: 32318.6 Da    PI: 8.1994
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G149000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.3e-17126180256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Glyma.19G149000.1.p 126 RKKLRLSKQQSVFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 180
                          678899***********************************************98 PP
2HD-ZIP_I/II124.84e-40126215191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+ +LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Glyma.19G149000.1.p 126 RKKLRLSKQQSVFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELR-A 214
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.19G149000.1.p 215 L 215
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-16111176IPR009057Homeodomain-like
SuperFamilySSF466894.6E-18112183IPR009057Homeodomain-like
PROSITE profilePS5007116.876122182IPR001356Homeobox domain
SMARTSM003891.6E-14124186IPR001356Homeobox domain
PfamPF000461.3E-14126180IPR001356Homeobox domain
CDDcd000869.34E-15126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003408.7E-25182225IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-11182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELALSLGDT PKPFSLPAKN DSVSFKIALG DDKRVSSDPP VQLDLLPSTP VLPSSRLRIP  60
WLSDALGMER VTSEIPVRAV DDTDDGAALS SPNSAVSSFQ MDFCFRNSRK SCEGASDEDD  120
ENGSTRKKLR LSKQQSVFLE ESFKEHTTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEY LKRCCESLTE ENRRLQKELQ ELRALKTCQP FFMQLPATTL TMCPSCERVA  240
TNTTTTGAAA AAATTNNYNN VASAPMATNN NSVSQISAVL SVDRQARNIA LT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130TRKKLRL
2174182RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.625220.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G149000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311630.0KT031163.1 Glycine max clone HN_CCL_195 homeodomain/HOMEOBOX transcription factor (Glyma03g30200.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553433.10.0homeobox-leucine zipper protein HOX11
RefseqXP_028217456.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466654e-83HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0B2SLX50.0A0A0B2SLX5_GLYSO; Homeobox-leucine zipper protein HAT14
TrEMBLK7MYG70.0K7MYG7_SOYBN; Uncharacterized protein
STRINGGLYMA19G33100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-69homeobox from Arabidopsis thaliana