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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G224100.1.p | ||||||||
Common Name | GLYMA_18G224100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CPP | ||||||||
Protein Properties | Length: 109aa MW: 11997.5 Da PI: 6.9783 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.6 | 1.2e-13 | 13 | 49 | 1 | 37 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 ++k gCn k+s ClkkYCeC++a++ Cs+ C+Ce+C+ Glyma.18G224100.1.p 13 RHKSGCNYKRSMCLKKYCECYQANVGCSSGCQCEGCN 49 5899********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 16.051 | 1 | 53 | IPR005172 | CRC domain |
SMART | SM01114 | 1.3E-11 | 13 | 53 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.0E-9 | 16 | 49 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MDDENLTTPS SARHKSGCNY KRSMCLKKYC ECYQANVGCS SGCQCEGCNV HGKKEDYVAF 60 EHTSSKERVS SIVEEGSAHT FHNKLEMVAS KTVYDSLPLT YNAIIAML* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.8470 | 1e-153 | cotyledon| hypocotyl| meristem| seed coat| somatic embryo| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 4218186 | 1e-153 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G224100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010165 | 1e-151 | AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025982093.1 | 9e-53 | cysteine-rich polycomb-like protein isoform X1 | ||||
Refseq | XP_025982094.1 | 9e-53 | cysteine-rich polycomb-like protein isoform X1 | ||||
Swissprot | Q9LUI3 | 4e-17 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | K7MU27 | 1e-74 | K7MU27_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G45736.1 | 2e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8565 | 28 | 41 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-19 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G224100.1.p |
Publications ? help Back to Top | |||
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