PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G052100.1.p
Common NameGLYMA_18G052100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 936aa    MW: 103150 Da    PI: 7.4767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G052100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95.1e-20363463199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++
  Glyma.18G052100.1.p 363 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLCAGDTVTFSRID 451
                          99**************************666778999***************9989999999***9.********************887 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            +++lv++++++
  Glyma.18G052100.1.p 452 -PGGKLVMGFRKA 463
                          .788888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-30359470IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20361463IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-23361462No hitNo description
SMARTSM010197.5E-23363464IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532363464IPR003340B3 DNA binding domain
PfamPF023621.6E-16363462IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181624674IPR011124Zinc finger, CW-type
PfamPF074962.3E-9629671IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MGSNICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPFST IPDKVLNCGC  60
GCGFVAIIDI AGKCRSAYEN SVFCNKFHCQ QTGWRECNFC NKPIHCGCIV SRSLFEYLDF  120
GGIGCVSCVN TTQLSMMRNM ENPNVTVLSI KNNAGDRHSA HFDGRLPVGG VDEGKLMQFC  180
KIIEASESSR WNHAQRDGII AHRGQKNQEA KSSFREVEIG FSNVMNPSVQ SLTFATLENN  240
RSTWEIKNMH ESNTKPSLSM YLGNASGNNS VPPSAGEAVE GRLDGKTSPP FQGSRSIFPK  300
PLKNGLTMNM ETNKGTMSQS RVARPPADGR GKNQLLPRYW PRITDEELER LAGDLKSTVV  360
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGVPL RMQDVKGNEW TFQFRFWPNN  420
NSRMYVLEGV TPCIQAMQLC AGDTVTFSRI DPGGKLVMGF RKASNSTDTQ DASTSAQSNS  480
AKGTVSSGTE NLPSGSNNAD LLHSLTGNVE CHLNGHTEHL HLGTGTAGLL KTENNEMTNS  540
SSPQQQISVL EKKRTRNIGP KSKRLLIDNE DAMELKLTWE EAQDLLRPPP SVKPSIVTIE  600
DQVIEEYDEP PVFGKRTIFS ACSSGGKEQW AQCDDCSKWR KLPVDALLPP KWTCCENVWD  660
SSRCSCSAPE ELSSREIENL LKNNKDFKKR RIVESSKSIQ EHEPSGLDAL ASAAVLGENL  720
IDTAESSAGV TTKHPRHRPG CSCIVCIQPP SGKGRHKPTC TCNVCMTVKR RFKTLMLRKK  780
KRQSEREADA AQKDQTLPKD ELDTNGASRD DTSQLEKEAG LKSQHEVGGS SAGQIDLNSH  840
PNREDMQVET TGLNMSSHLE PATNHTVGEF MNQNGLRNFN NEVQTGQNSS LHTPKSNGEG  900
QRYFSDGRCF ASIMWNQERK DEVHSQTNQS QNNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-693414702131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1768779KRRFKTLMLRKK
2768781KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G052100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602056.20.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_006602057.20.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_006602058.20.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_006602059.20.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014626492.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014626493.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014626494.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014626495.10.0B3 domain-containing transcription repressor VAL1 isoform X1
TrEMBLK7MQ270.0K7MQ27_SOYBN; Uncharacterized protein
STRINGGLYMA18G05840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2