PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G093600.1.p

Common Name

GLYMA_16G093600, LOC100810821

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 267aa MW: 30957.1 Da PI: 7.2392

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G093600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52	1.9e-16	19	109	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt+qe+ +Li+a++e++ +l+rg l+ ++Weev+ ++ +s+ qC++k+e+l++r++++k+++ ++ + ++y + Glyma.16G093600.1.p 19 WTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVaarcgydL-AHPAKSALQCRHKMEKLRQRHRAEKKQQHTAAALRPGAWQYNTL 107 ***********************************86666522.23368********************99988888888887766 PP trihelix 85 le 86 ++ Glyma.16G093600.1.p 108 MD 109 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.04	18	81	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-15	18	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MATPPNDAAS TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVVVAARCG 60 YDLAHPAKSA LQCRHKMEKL RQRHRAEKKQ QHTAAALRPG AWQYNTLMDD LERGPLPISA 120 LAPLDTFEEE DENNDDTIDD RNDYDGDGSF INIKSKSINC ILSERPVRMR SNKRGFLREH 180 VVVKEEEENE NEDDDVLGLS TEMRAFAERF IGMESLKMEM MKETERCRLE MEKKRIQMIL 240 ETQRRIVDSI GRAFGSNKRI KITQQN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38248	0.0	hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G093600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006599184.1	0.0	uncharacterized protein LOC100810821
TrEMBL	K7MG72	0.0	K7MG72_SOYBN; Uncharacterized protein
STRING	GLYMA16G14040.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-32	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.16G093600.1.p
Entrez Gene	100810821