PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G180000.1.p
Common NameGLYMA_15G180000, LOC100813688
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 214aa    MW: 23508 Da    PI: 4.796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G180000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-172170255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g++v+eIr p++   r+r++lg++++ae+Aa+a +aa+ +l+g
  Glyma.15G180000.1.p 21 AYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAEKAARAFDAAMFCLRG 70
                         69****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-282078No hitNo description
SuperFamilySSF541719.15E-202079IPR016177DNA-binding domain
PfamPF008471.3E-102170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-282179IPR001471AP2/ERF domain
PROSITE profilePS5103220.9562178IPR001471AP2/ERF domain
SMARTSM003803.9E-302184IPR001471AP2/ERF domain
PRINTSPR003672.4E-92233IPR001471AP2/ERF domain
PRINTSPR003672.4E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKSKSVEKP AEEQQRGGVS AYRGVRKRKW GKYVSEIRLP NSRQRIWLGS YDSAEKAARA  60
FDAAMFCLRG SGANFNFPSD RPNIAGGRNM TPSQIQIAAA RFANSEPRKE CSGKPVESLT  120
SIEETTSFPV NSDTDTSSPL SVVTIQNDTE VATGSFPGIF SGFGSGNFVP EFSDFPSFDD  180
FGHDFFVHEL PGFDYGEENL DGLIIQDSFL WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1622801574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.597920.0vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G180000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310830.0KT031083.1 Glycine max clone HN_CCL_204 AP2-EREBP transcription factor (Glyma09g08330.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546516.11e-156ethylene-responsive transcription factor ERF017
RefseqXP_028203040.11e-156ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-49ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0R0G2K11e-155A0A0R0G2K1_SOYBN; Uncharacterized protein
TrEMBLA0A445GV411e-155A0A445GV41_GLYSO; Ethylene-responsive transcription factor ERF017
STRINGGLYMA15G19910.21e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]