PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G067900.1.p
Common NameGLYMA_15G067900, LOC100807252
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 879aa    MW: 96724.1 Da    PI: 7.6631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G067900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18335434198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +
  Glyma.15G067900.1.p 335 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE 423
                          99**************************555566778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Glyma.15G067900.1.p 424 -PEGRLVMGFRK 434
                          .67767777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-30332438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-20332434IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-22333434No hitNo description
PfamPF023621.4E-15335434IPR003340B3 DNA binding domain
SMARTSM010194.4E-21335436IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138335436IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286562612IPR011124Zinc finger, CW-type
PfamPF074961.2E-12567609IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA  60
SGWRSCETCR KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFPLQNRL  120
SDRLRDLSGK GWSQLAGSGP VPWKQAPSLF NSASSSDMIP EVPSLVELSN SFDKMYCNER  180
LPVSALEKKN EDLSGMSVNW NIKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP  240
QPFGLPVPNS CQNERNGKLG VTGSHPQQTP PPGKQFNGTM HLAPDSSGEA QVRNGRPRAD  300
ARGRNQLLPR YWPRCTDLEL QQISIDSNSV ITPLFQKTLS ASDAGRIGRL VLPKKCAETY  360
FPPISQPEGL PLKILDAKGK EWIFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS  420
RLEPEGRLVM GFRKASSAVP SDQDNETKTG NGFSAHGEVE LADPNSWSKV DKSGYIAKEA  480
LGSKSLISRK RKSNILGSKS KRLRIENEDL IELKITWQEA QGLLRPPPSH IPSIVVIEGF  540
EFEEYEEAPV LGKPTIFTSD SVGEKIQWAQ CEDCFKWRKL PASALLPSKW TCSDNSWDPE  600
RSSCSAAQEL TAEQLENLLP PCSSAVPKKM KAAKQDPDNA EALEGLDTLA NLAILGEGEA  660
LPASAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMLRREKK  720
QSEKEAETTR KKQQQQHPQP LPSSEILLDE DSLPCSNTGD SSPNQNKEGN DGSDDDPNRI  780
KSSALPFKGQ IDLNIQPERE EELSPGSDSG GMMKLLHDAT ERYLKQQTVN SGTGDSSGSQ  840
SRLVGDAMRE DKLSNGVAHG SGSHNTDKEH AQSLSMNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-623134382127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487492SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.325440.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G067900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597399.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLI1MEA80.0I1MEA8_SOYBN; Uncharacterized protein
STRINGGLYMA15G07350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-158high-level expression of sugar-inducible gene 2