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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G190400.1.p | ||||||||
Common Name | GLYMA_14G190400, LOC100783016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 44922.2 Da PI: 5.0832 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.8 | 1.4e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ Glyma.14G190400.1.p 5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 *****************************65677777765 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 +C++++++++ C d + lC++C +H g H+++++ Glyma.14G190400.1.p 46 LVCERCNSQPAFVRCVDEKISLCQNCDWLGH-GtspssstHKRQSI 90 68*****************************.55888899988765 PP | |||||||
3 | CCT | 64.6 | 3e-22 | 354 | 397 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ Glyma.14G190400.1.p 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 397 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.428 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.43E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 6.8E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.745 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.82 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.467 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.5E-17 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC 60 VDEKISLCQN CDWLGHGTSP SSSTHKRQSI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE 120 QELGLMSINE NSNKNAWASP EGQNVSGSAE VTDLPSKGKS WAGTSSVPES SSEPRILDQP 180 PGPANECMPK LYCPGKKVSG IYEDDDLYDD FIMDEVDLQL ENYEELFGMA LSHSEELFEN 240 GGINSLFETK DMSASAGDSH CQGAVAAEGS SAELVNAIQP ACSNAASADS MMSTKTEPIV 300 CFTARQSLSN ISFSGVTKDS VGDYQDCGAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR 360 YKEKKKTRKF EKKVRYASRK ARADVRKRVK GRFVKAGDVY DYDPLNQTRS C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32716 | 0.0 | cotyledon| epicotyl| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G190400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068899 | 0.0 | HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544867.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_006596415.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_014622611.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_014622612.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_014622613.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_028200652.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200653.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200654.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200655.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200656.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200657.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200658.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028200659.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 1e-146 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A445H831 | 0.0 | A0A445H831_GLYSO; Zinc finger protein CONSTANS-LIKE 10 isoform A | ||||
TrEMBL | I1MB79 | 0.0 | I1MB79_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G36930.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 | Representative plant | OGRP1375 | 13 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-121 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G190400.1.p |
Entrez Gene | 100783016 |
Publications ? help Back to Top | |||
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