PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G279900.1.p
Common NameGLYMA_13G279900, Glyma13g35550.1, SNAC49
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 344aa    MW: 38666.4 Da    PI: 8.1129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G279900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51141391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
  Glyma.13G279900.1.p  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
                          79**************************99.88***************7777799*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Glyma.13G279900.1.p 103 IITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                          9999.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-6710163IPR003441NAC domain
PROSITE profilePS5100560.25114162IPR003441NAC domain
PfamPF023653.1E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGVPEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLL DSSRKNTGTK LDDWVLCRIY KKNSSAQKTA QNGVVPSNEH  180
TQYSNGSSSS SSSQLEDVLE SLPSIDERCF AMPRVNTLQQ QQHHEEKVNV QNLGAGGLMD  240
WTNPSVLNSV ADFASGNNQV VQDQTQGMVN YNCNDLYVPT LCHLDSSVPL KMEEEVQSGV  300
RNQRVGNNNS WFLQNDFTQG FQNSVDTCGF KYPVQPVGFG FRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10911684171NO APICAL MERISTEM PROTEIN
3swm_A1e-10911687174NAC domain-containing protein 19
3swm_B1e-10911687174NAC domain-containing protein 19
3swm_C1e-10911687174NAC domain-containing protein 19
3swm_D1e-10911687174NAC domain-containing protein 19
3swp_A1e-10911687174NAC domain-containing protein 19
3swp_B1e-10911687174NAC domain-containing protein 19
3swp_C1e-10911687174NAC domain-containing protein 19
3swp_D1e-10911687174NAC domain-containing protein 19
4dul_A1e-10911684171NAC domain-containing protein 19
4dul_B1e-10911684171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.332220.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G279900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312180.0KT031218.1 Glycine max clone HN_CCL_59 NAC transcription factor (Glyma13g35550.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238221.20.0NAC transcription factor NAC27
RefseqXP_028191254.10.0NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-135JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A445IB280.0A0A445IB28_GLYSO; NAC domain-containing protein 55
TrEMBLI1M3B90.0I1M3B9_SOYBN; NAC transcription factor
STRINGGLYMA13G35550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-121NAC domain containing protein 3
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]