PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G245900.1.p
Common NameGLYMA_13G245900, LOC100782114
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 880aa    MW: 96869.3 Da    PI: 7.4485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G245900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18336435198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +
  Glyma.13G245900.1.p 336 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE 424
                          99**************************555566778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Glyma.13G245900.1.p 425 -PEGRLVMGFRK 435
                          .67767777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-30333442IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-20333435IPR015300DNA-binding pseudobarrel domain
CDDcd100178.15E-22334435No hitNo description
PROSITE profilePS5086311.138336437IPR003340B3 DNA binding domain
SMARTSM010194.4E-21336437IPR003340B3 DNA binding domain
PfamPF023621.4E-15336435IPR003340B3 DNA binding domain
PROSITE profilePS5105014.096563613IPR011124Zinc finger, CW-type
PfamPF074964.8E-12568610IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA  60
SGWRSCETCL KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFSLQNRL  120
SDRLRDLSAK GWSQLAGSGP VPWKQAPSLF NSASSSDLIP EVPSLVELSN SFDKMYCNER  180
LPASALEKKN EDLSGIPVNW NVKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP  240
QPFGLAVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQIRNGRPRA  300
DSRGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET  360
YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  420
SRLEPEGRLV MGFRKASSVM PSDQDNETKT GNGFSAHGEV ELADPNSWSK VDKSGYIAKE  480
ALGSKSLISR KRKSNILSSK SKRLRIENED LIELKITWQE AQGLLRPPPS HIPSIVVIEG  540
FEFEEYEEAP VLGKPTIFTS DSVGEKIQWA QCEDCFKWRK LPASALLPSK WTCSDNSWDP  600
ERFSCSAAQE LTAEQLENLL PPCNSAVPKK MKATKQDPDN AEALEGLDTL ANLAILGEGE  660
ALPASAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FRTLMLRREK  720
KQSEKEAETT RKKQQQQHPL PLPSSEILLD EDSLPCSNTG DSSPNQNKEG NDGSDDDPSR  780
IKSSASPFKG KIDLNIQPER EEELSPGSDS GGMMKLLHDA TERYLKQQTV NSGTGDSSGS  840
QSQLVGDAMR EDKLSNGVAH GSSSHNTDKE HAQSLPMNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-613144382126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488493SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37240.0cotyledon| flower| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G245900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594624.10.0B3 domain-containing protein Os07g0563300
RefseqXP_028187625.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A445I9N90.0A0A445I9N9_GLYSO; B3 domain-containing protein isoform A
TrEMBLI1M2C30.0I1M2C3_SOYBN; Uncharacterized protein
STRINGGLYMA13G31970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-157high-level expression of sugar-inducible gene 2