PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G189400.1.p

Common Name

GLYMA_13G189400, LOC100814712

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 288aa MW: 31679 Da PI: 5.0633

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G189400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.4	1.8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl d+v r Glyma.13G189400.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	8.75E-21	4	99	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY SHGHGHAEAG PDDRAIAKRR KAVGDDGNDS 120 DEEAKRSKMH ELGHTGSTGR GRGRGRGRGR GRGRPPLNRE IYHQDAESEP CTSVQPSNPQ 180 NTNTSVAMDS GSESKEIPKE QNIAVPVEST DSLRNIDLNA ITNENDDKKA SAAADASVPE 240 PPTESKHEEI PGWSLSDVDK MAIDSLQLAQ LGRPLEEDEE DYDEEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	152	RGRGRGRGRG
2	143	153	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G189400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094155	0.0	BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001350899.1	0.0	class 2 transcription repressor NC2 alpha 4
TrEMBL	I1M0K0	0.0	I1M0K0_SOYBN; Uncharacterized protein
STRING	GLYMA13G25860.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-78	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Glyma.13G189400.1.p
Entrez Gene	100814712