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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G250000.1.p | ||||||||
Common Name | GLYMA_11G250000, LOC100790556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 171aa MW: 18951.5 Da PI: 6.5503 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.4 | 5e-16 | 14 | 94 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P r+kki+ d+dvk++s+ea l+s++ elf+ l+ +s a e+kr+t++ i av+r + + dfl+d+ p Glyma.11G250000.1.p 14 QLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQpTRDFLLDELP 94 789***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-20 | 13 | 80 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.35E-19 | 15 | 82 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-19 | 16 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MVMADEEENG VSIQLEFPKG RVKKIMALDK DVKRVSSEAL FLVSRSTELF LQFLAEKSAQ 60 VAIEKKRKTV NLEHIRVAVK RHQPTRDFLL DELPPPSQAA KPDKPTQPAG RPKLDPAPRG 120 TRCIDQFFRK PEPENTAQAP GQPPENPAQA QSPENPDQDQ AQSPVPVDES * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25169 | 0.0 | flower| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 10252736 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G250000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537536.2 | 1e-119 | dr1-associated corepressor | ||||
Refseq | XP_028195939.1 | 1e-119 | dr1-associated corepressor-like | ||||
TrEMBL | A0A0R0HSF8 | 1e-118 | A0A0R0HSF8_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HI05 | 1e-118 | A0A445HI05_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA11G37130.1 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 | Representative plant | OGRP9472 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-47 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G250000.1.p |
Entrez Gene | 100790556 |