PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G245500.1.p
Common NameGLYMA_10G245500, LOC100820491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 761aa    MW: 82345.3 Da    PI: 6.156
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G245500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.24.9e-16473511240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Glyma.10G245500.1.p 473 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACHDCFNKP 511
                          689**********************************96 PP
2TCR50.15.4e-16558597140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Glyma.10G245500.1.p 558 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 597
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18472513IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.811473598IPR005172CRC domain
PfamPF036381.5E-11475510IPR005172CRC domain
SMARTSM011142.6E-17558599IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11560596IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MDTPDRSKIN TPLSQFEDSP VFNYISNLSP IEPVKSVHLT HTFNSYSFSS PPSVFTSPHG  60
NCHKESRFLK RHNLLETSKP KVWSEDVNSV YSSEETLADS TQACHESSEQ QENTAQKISI  120
GDASIEPCNE NPNISIELPQ VLKCNLGSPG YEPLLCCDEA NSLLELPGNG KPASDVAYVP  180
EGSEKDSIEG EMHLLGLCQI EEAKVEGPNC GVDSLITEVS DLLMLSPPNV TEAFKGLNKQ  240
LNPSIELGNF MTLIPQSATN DGQQMHIGNA VASGSEHEIE DHPSESAAAT GTGQRQDNLA  300
NVALVASHPS ENMDNKLVYA RHRGIRRRCL DFEMAIVQWK NPADNSNTNS STAISDEGNV  360
GNEKQLLPTK HSGDSRRCVL PGIGLHLNAL ASLKDCKNVK IENLSSGRQP NLHCSPSSVQ  420
LSASQELQLS LVPASSEIDL VPSENEVQPG EDFQQNSPKK KRCKLEPAGE GESCKRCNCK  480
KSKCLKLYCE CFAAGVYCIE PCACHDCFNK PIHVETVLQT RQQIESRNPL AFAPKVIRSS  540
DSVSEIGDDP NKTPASARHK RGCNCKKSSC LKKYCECYQG GVGCSISCRC EGCKNTYGRK  600
DGSVPSGLEA EPEEETEACE KGVVENASLK TETKNTEDHP DQSLATTPLP LSRSLLPLSF  660
SSKCKPPRSS VITISSSGLL VGQKLGKSNA PWSQSQPKCE KPLETVPDDD SSVTCIKTSS  720
PNGKRISSPN CKVGSSPTRR GGRKLILQSI SSFPSLTPHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1647759514120Protein lin-54 homolog
5fd3_B1e-1647759514120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457464PKKKRCKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G245500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535640.10.0protein tesmin/TSO1-like CXC 2
RefseqXP_028185643.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A445ISA70.0A0A445ISA7_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform A
TrEMBLK7LL800.0K7LL80_SOYBN; Uncharacterized protein
STRINGGLYMA10G39080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-111TESMIN/TSO1-like CXC 2