PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G194200.1.p
Common NameGLYMA_10G194200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 202aa    MW: 22655.6 Da    PI: 7.9982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G194200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19110161256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrdp++ g   r++lg+f+t+ +Aaka++ a+ +++g+
  Glyma.10G194200.1.p 110 RYRGVRRRP-WGKFAAEIRDPKKKG--SRVWLGTFDTEIDAAKAYDCAAFRMRGH 161
                          7********.**********96643..**********99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-14110161IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22110170IPR016177DNA-binding domain
PROSITE profilePS5103224.342110168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-32110169IPR001471AP2/ERF domain
SMARTSM003807.7E-37110174IPR001471AP2/ERF domain
PRINTSPR003675.9E-13111122IPR001471AP2/ERF domain
CDDcd000187.19E-24118168No hitNo description
PRINTSPR003675.9E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MATAEEISTL KLLRQYLLGD ISDPFLTNLI PVKLEDRSSE LDMGSNFSEH SSFCKLLECI  60
DFEADTEVVG LTSHHKVENS IETSLPHNSN LPEEPMVSTK KEATCYATRR YRGVRRRPWG  120
KFAAEIRDPK KKGSRVWLGT FDTEIDAAKA YDCAAFRMRG HKAVLNFPLE AGMSHPEPNS  180
SGRKRRRDYT TAVTSSSHVM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.275680.0cotyledon| flower| hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G194200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0893300.0BT089330.1 Soybean clone JCVI-FLGm-1N23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235253.21e-150DNA-binding domain-containing protein
RefseqXP_028184181.11e-150ethylene-responsive transcription factor ERF107-like
TrEMBLA0A445IPY41e-149A0A445IPY4_GLYSO; Ethylene-responsive transcription factor ERF106
TrEMBLI1LCJ01e-149I1LCJ0_SOYBN; Uncharacterized protein
STRINGGLYMA10G33810.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-33ERF family protein