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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G184600.1.p | ||||||||
Common Name | GLYMA_09G184600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 481aa MW: 53913.4 Da PI: 4.5766 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.8e-07 | 16 | 61 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + + +++++C ++ +lC+ C H+ H++v+l Glyma.09G184600.1.p 16 ARACESCLKVRARWYCAADDAFLCHGCDNMVHSAnqlasrHERVKL 61 578******99*********************66889999998875 PP | |||||||
2 | CCT | 68.8 | 1.4e-23 | 419 | 461 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Glyma.09G184600.1.p 419 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKS 461 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.111 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.8E-7 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-5 | 16 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.98E-6 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.023 | 419 | 461 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.4E-18 | 419 | 461 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK 60 LQTASSKVNY SVTPKVAWHS GFTRKARTPR SNNKHSSLQQ QQQKPLHEEQ GEEEEVFFNN 120 TIISVQPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVN VAGGEVAFDL 180 ENFSSEFLPT DMDLAEFSAD VESLLGNGVD EDSPVKKGSE LVLLDCKEEG DDEMDACVNG 240 IGANKDAMVK VKDEEELDAD DDTACHLDSI LDMNSEAFNW NIAESESPAQ AQEDEVSKVG 300 TNKKDIFLRL NYEEVITAWA SQGSPWTTGT PPKFFNSDDC WLDLFSYSII ADLIYIWLKE 360 EGCVASSVTD VKFVDIPEII RRAEMCYAFG NQCKGSNGGG VQCYYGEVRS LRVHADGGRE 420 ARVSRYREKR RTRLFAKKIR YEVRKLNAEK RPRMKGRFVK SVPLLEPLLC QLNYQSSPLT 480 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 429 | 445 | RRTRLFAKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57200 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G184600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068905 | 0.0 | HM068905.1 Glycine max CONSTANS-like zinc finger protein (COL23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239992.2 | 0.0 | CONSTANS-like zinc finger protein | ||||
Refseq | XP_028239840.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | K7M1Z5 | 0.0 | K7M1Z5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G33420.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-80 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G184600.1.p |