PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G137000.1.p

Common Name

GLYMA_09G137000, LOC100780901

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 991aa MW: 109527 Da PI: 6.3339

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G137000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	575	626	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Glyma.09G137000.1.p 575 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 626 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	563	646	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-25	579	626	IPR003035	RWP-RK domain
PROSITE profile	PS51745	24.955	890	972	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.1E-28	890	971	No hit	No description
SMART	SM00666	9.4E-29	890	972	IPR000270	PB1 domain
SuperFamily	SSF54277	9.48E-24	890	975	No hit	No description
Pfam	PF00564	3.5E-20	891	971	IPR000270	PB1 domain
CDD	cd06407	8.66E-37	891	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MSESKDENPD LPPKSKPQEE HGFAMDFDIS LESLWPSDHI SLVSNPMSPF LFSTISDQPC 60 SPVWAFSDAE DERLIRIAAS AGNTNTTTEN LVENYDNKKT VPPLVAIPTS ENPDAYCLIK 120 ERMTQALRHF KELTEQNVLA QVWAPMRNGN RYALTTSGQP FVLDPHSNGL HQYRTVSLMY 180 MFSVDGENDE IMGLPGRVFQ QKIPEWTPNV QFYSSKEYQR LNHAQHYNVR GTLALPVFEL 240 AGQSCVAVVE LIMTSQKINY APEVDKICKA LEAVKLRSSE ILEHQYIQIC NEDRQYALAE 300 ILEILTVVCE THSLPLAQTW VPCKHRSVLA HGGGHKKSCS SFDGCCMGQV CMSITEVAFY 360 VIDAHTWGFH EACVEHHLQQ GQGVAGRAFL SHNMCFCGNI AQFCKTEYPL VHYALMFGLT 420 SCFAVCLQSS HTGNDDYVLE FFLPPGITDF NEQKRLLGSI LATMKPHFQS LKIASGIELE 480 ENASIEIIEA RNERVNLRFE SIPITQSSKS PPRHASPNVG EGLPLEPSEQ KIMAYFDGIN 540 DGGSLGDNAG GHIDQNTSLK IKTKKKPSER KRGKAEKSIS LDVLQHYFTG SLKDAAKSLG 600 VCPTTMKRIC RQHGISRWPS RKIKKVNRSL SKLKCVIESV HGAERAFGLN SLSTVSLPIA 660 AGSFSEPSTS NKFNRQTSLT IRPSEPKINE KDFDASGASE TKRQAAMEDQ FLGLEARAQS 720 PEKVINDRGV ATQEIGTKGT NKFRTGSGSS ESSGNPTPHG SCHGSPPNEI SPPKDIFVTG 780 HSEKCLVLRG SLGSTTLHST STPNCTTAYP MPHIVETTEP QELFGGQLLE RAGSSKDLRN 840 LCPSADAVLE DQVPEAYKMN PQCSDLPQMQ HMDNLNNTLT PFAVRKEVKS VTIKATYKED 900 IIRFKVSMDC GIVELKEEIA KRLKLEAGTF DIKYLDDDHE WVLIACDADL QECMDISRSS 960 GSNVIRLVVH DILPILGSSC ESSGDWKGCI *

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MSESKDENPD LPPKSKPQEE HGFAMDFDIS LESLWPSDHI SLVSNPMSPF LFSTISDQPC  60
SPVWAFSDAE DERLIRIAAS AGNTNTTTEN LVENYDNKKT VPPLVAIPTS ENPDAYCLIK  120
ERMTQALRHF KELTEQNVLA QVWAPMRNGN RYALTTSGQP FVLDPHSNGL HQYRTVSLMY  180
MFSVDGENDE IMGLPGRVFQ QKIPEWTPNV QFYSSKEYQR LNHAQHYNVR GTLALPVFEL  240
AGQSCVAVVE LIMTSQKINY APEVDKICKA LEAVKLRSSE ILEHQYIQIC NEDRQYALAE  300
ILEILTVVCE THSLPLAQTW VPCKHRSVLA HGGGHKKSCS SFDGCCMGQV CMSITEVAFY  360
VIDAHTWGFH EACVEHHLQQ GQGVAGRAFL SHNMCFCGNI AQFCKTEYPL VHYALMFGLT  420
SCFAVCLQSS HTGNDDYVLE FFLPPGITDF NEQKRLLGSI LATMKPHFQS LKIASGIELE  480
ENASIEIIEA RNERVNLRFE SIPITQSSKS PPRHASPNVG EGLPLEPSEQ KIMAYFDGIN  540
DGGSLGDNAG GHIDQNTSLK IKTKKKPSER KRGKAEKSIS LDVLQHYFTG SLKDAAKSLG  600
VCPTTMKRIC RQHGISRWPS RKIKKVNRSL SKLKCVIESV HGAERAFGLN SLSTVSLPIA  660
AGSFSEPSTS NKFNRQTSLT IRPSEPKINE KDFDASGASE TKRQAAMEDQ FLGLEARAQS  720
PEKVINDRGV ATQEIGTKGT NKFRTGSGSS ESSGNPTPHG SCHGSPPNEI SPPKDIFVTG  780
HSEKCLVLRG SLGSTTLHST STPNCTTAYP MPHIVETTEP QELFGGQLLE RAGSSKDLRN  840
LCPSADAVLE DQVPEAYKMN PQCSDLPQMQ HMDNLNNTLT PFAVRKEVKS VTIKATYKED  900
IIRFKVSMDC GIVELKEEIA KRLKLEAGTF DIKYLDDDHE WVLIACDADL QECMDISRSS  960
GSNVIRLVVH DILPILGSSC ESSGDWKGCI *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22386	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G137000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533182.2	0.0	protein NLP6
Refseq	XP_028181204.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0B2S9T7	0.0	A0A0B2S9T7_GLYSO; Protein NLP7
TrEMBL	K7LDR9	0.0	K7LDR9_SOYBN; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Glyma.09G137000.1.p
Entrez Gene	100780901

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]