PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G116400.1.p
Common NameGLYMA_09G116400, LOC100787329
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 491aa    MW: 55822.4 Da    PI: 7.0918
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G116400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.87.2e-2942127187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e++aL+++r+em+ ++++++lk+plWe+vs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+  +t+++f+qlea
  Glyma.09G116400.1.p  42 RWPREETMALLKIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGK-SNGAKTYRFFEQLEA 127
                          8********************************************************************97.67778********85 PP
2trihelix93.61.9e-29320412187
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          rW+k+ev aLi++r++++ + + ++       +k+plWee+s++m++ g+ rs+k+Ckekwen+nk++k+ike +k++ +++s+tcpy++
  Glyma.09G116400.1.p 320 RWPKDEVEALIRLRTQIDVQAQWNNnnnnndgSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRK-PQDSKTCPYYH 408
                          8**************88877774333345566********************************************86.9********** PP

             trihelix  84 qlea 87 
                          +lea
  Glyma.09G116400.1.p 409 HLEA 412
                          *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.6083599IPR017877Myb-like domain
SMARTSM007178.3E-439101IPR001005SANT/Myb domain
CDDcd122032.54E-2141106No hitNo description
PfamPF138374.6E-1941128No hitNo description
SMARTSM007171.9E-4317386IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-4318383IPR009057Homeodomain-like
PfamPF138371.2E-20319413No hitNo description
PROSITE profilePS500907.433319384IPR017877Myb-like domain
CDDcd122032.14E-21319391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLEISTSHET PLENADGGSA AVSDGSKAEH GEDDDRNPAA NRWPREETMA LLKIRSEMDV  60
AFKDANLKAP LWEQVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKEGRF GKSNGAKTYR  120
FFEQLEALDG NHSLLPPTTT VGDDVVLNAV PCSVSAAAHE HSSSTTSCSG KKKRKLTQFL  180
EGLMREVIEK QETLQRKFVE VLDKCEKDRM AREEAWKKEE LERIKKEREL LAQERSIAAA  240
KDEVVLAFLR KFAEAEGTVQ LLEKIQVQND KQKNMKQNGG NDNANGGGGV TVVTDMDKQE  300
CGNTNVRVSV GNFVHMSSSR WPKDEVEALI RLRTQIDVQA QWNNNNNNND GSKGPLWEEI  360
SSAMKSLGYD RSAKRCKEKW ENINKYFKRI KEKSKRKPQD SKTCPYYHHL EALYSKKPKK  420
VDHGNELKPE ELLMHIMVSQ SQEQQQEMQT QTQSPSEDAE RDQNQGDNED QSEYQTQMVD  480
NNSPSIAIMS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.370990.0cotyledon| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G116400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217530.0EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533931.10.0trihelix transcription factor GT-2
SwissprotQ391172e-61TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLK7LDB70.0K7LDB7_SOYBN; Uncharacterized protein
STRINGGLYMA09G19750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-57Trihelix family protein