PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G215700.1.p
Common NameGLYMA_08G215700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 200aa    MW: 21870.7 Da    PI: 10.5344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G215700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2073123256
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  Glyma.08G215700.1.p  73 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 123
                          69*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-1572131No hitNo description
Gene3DG3DSA:3.30.730.108.9E-3073130IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2273131IPR016177DNA-binding domain
SMARTSM003803.1E-3273136IPR001471AP2/ERF domain
PfamPF008472.0E-1473122IPR001471AP2/ERF domain
PROSITE profilePS5103222.72173130IPR001471AP2/ERF domain
PRINTSPR003676.7E-117485IPR001471AP2/ERF domain
PRINTSPR003676.7E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNGEIFLHAP TTTTATTTTN FLLPKPETKS SEKLRYETAL EGIAAVVGEH VLFGTTSSSH  60
VSETPKKTSV GKSYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA RAYDAAARRL  120
RGAKARTNFQ IPSVLPLSPE GVHGGAVKPK TARNNARKCS SVEQLFSGVP QLRKDDGIGE  180
NGNVEVDLKF GVNFGFYKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1771131364ATERF1
3gcc_A5e-1771131364ATERF1
5wx9_A1e-16741291571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G215700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585621.11e-146ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-28ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLK7L8031e-145K7L803_SOYBN; Uncharacterized protein
STRINGGLYMA08G23074.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-26ERF family protein