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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.08G009300.3.p |
| Common Name | GLYMA_08G009300, LOC100785547 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 318aa MW: 35553.3 Da PI: 9.7176 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.08G009300.3.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 339.2 | 1.1e-103 | 1 | 317 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaer 70
mdd ++e r+k +y+ ++ ++l +++++ s++aer+a+i e ++a+sek++a+a+rd a +qrd+ala+r
Glyma.08G009300.3.p 1 MDDGHQHEnsRHKMeFYRgarslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELETAISEKNEALAARDAAIQQRDEALAQR 88
666555445799887888999999999876653335666..99**************76677889************************* PP
GAGA_bind 71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
++al+erdn+l+al+ ++ns + p+g ++ g+k ++++ + + +++++ a+ ++++ + +a p++ ++ea ++++ k+++++k+
Glyma.08G009300.3.p 89 DNALLERDNALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYSTKDMIIRDASPVTVIPSEAVNSHQAKRTKQNKVIN 175
****************9998..66799999999******8887.669********************99999999999888888887766 PP
GAGA_bind 161 ekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
+k +k k+kk +e+ +++ ++e+ ++ ++e++++d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+
Glyma.08G009300.3.p 176 SKASKppcKVKKMGEDLNRQASSEG--TKIRSEWDKQDVGLNLVAFDETIMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMYPLPQL 263
6655544688888888877777777..67************************************************************* PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++r+aRi+grKmS+++f++lL++L +eG+dls p+DLk++WA+HGtn+++ti+
Glyma.08G009300.3.p 264 PNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317
*****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MDDGHQHENS RHKMEFYRGA RSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL 60
ETAISEKNEA LAARDAAIQQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG 120
SKRMHHSSNH LSNMTEAAYS TKDMIIRDAS PVTVIPSEAV NSHQAKRTKQ NKVINSKASK 180
PPCKVKKMGE DLNRQASSEG TKIRSEWDKQ DVGLNLVAFD ETIMPVPVCT CTGIPRQCYK 240
WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD 300
LKEYWARHGT NRYITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
