PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G112400.1.p
Common NameGLYMA_07G112400, LOC100810641
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35076.1 Da    PI: 7.5376
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19154208256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Glyma.07G112400.1.p 154 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 208
                          788899***********************************************98 PP
2HD-ZIP_I/II125.13.2e-40154243191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Glyma.07G112400.1.p 154 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 242
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.07G112400.1.p 243 L 243
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.5E-341118IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.8E-18128211IPR009057Homeodomain-like
SuperFamilySSF466891.11E-18140211IPR009057Homeodomain-like
PROSITE profilePS5007117.508150210IPR001356Homeobox domain
SMARTSM003893.5E-16152214IPR001356Homeobox domain
PfamPF000461.6E-16154208IPR001356Homeobox domain
CDDcd000862.16E-15154211No hitNo description
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
SMARTSM003409.4E-27210253IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-11210244IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGEKDDGLGL GLSLKLGWGE NNDNNNNQQQ HPFNVHKPPQ SVPNQRVSVN SLFHFHDENH  60
AMRNTDRSSE MRSFFRGIDV NLPPPPPSAA LAAFDDENGV SSPNSTISSI SGKRSEREGN  120
GEENERTSSS RGGGGSDDDE GGACGGDADA DASRKKLRLS KEQALVLEET FKEHNTLNPK  180
QKQALAKQLN LMPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCENLTEEN RRLQKEVQEL  240
RALKLSPHLY MQMNPPTTLT MCPSCERVAV SSASSSSSAT MPSALPPANL NPVGPTIQRP  300
MPVNPWAAML NQHRGRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158SRKKLRL
2202210RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.125830.0hypocotyl| leaf| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G112400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583536.10.0homeobox-leucine zipper protein HAT3 isoform X1
SwissprotP466024e-96HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLK7L1950.0K7L195_SOYBN; Uncharacterized protein
STRINGGLYMA07G14270.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-71homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]