PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G051600.1.p
Common NameGLYMA_06G051600, LOC100806862
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 550aa    MW: 60915.2 Da    PI: 6.0878
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G051600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.5e-084665041854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Glyma.06G051600.1.p 466 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 504
                          5887779******************************88 PP
2BELL74.32e-24338407171
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          +r++ ++kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  +r L+++i++ 
  Glyma.06G051600.1.p 338 QRHAAESKKSQLLTLLQLVDNRYSQCLDEIHTVVSAFQAATELDP-QIHAHFALQTISILYRDLRERISNY 407
                          68999****************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-21262406IPR006563POX domain
PfamPF075261.6E-26268405IPR006563POX domain
PROSITE profilePS5007111.078445508IPR001356Homeobox domain
SMARTSM003896.9E-6448512IPR001356Homeobox domain
CDDcd000865.70E-11448509No hitNo description
SuperFamilySSF466892.31E-15450517IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-26451514IPR009057Homeodomain-like
PfamPF059208.7E-15465504IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MESDMYTAAL DISGREATVI DEISQHSASN PLIQCYSLDL NNQSHIISGI SMLSGEQVIS  60
QGKTIVAVGD ASNPMENTEL QEHLAGGMPI TPSSLAAILA ARTGLEENLG NSSSALPPSL  120
CSMGALGAFF NNLQGTSNSN PLSATFEDCG YNEVSSKWNA NKFPKAPEID GTCQPYPFIA  180
NLDQNEWPSS NVANMANHAY HSSHFSKELS LSLATSTTAG MCSEVSCSNV TPCMNGTMSG  240
LEQASCSSSR ELSMNLGGNK YVEFSPEVLE SRYLVGIQEI LAQIGRYSFE NLEQLNYSAG  300
NHRSGGNKSS SAFPPKRRIL IDHNANSTYE AHAESPLQRH AAESKKSQLL TLLQLVDNRY  360
SQCLDEIHTV VSAFQAATEL DPQIHAHFAL QTISILYRDL RERISNYILA MGSNFNNSCS  420
EENEWSVETS FLQKQWALQQ LKRKDQLWRP QRGLPERSVS VLRAWMFQNF LHPYPKDAEK  480
HLLAVKSGLT RSQVSNWFIN ARVRLWKPMI EEMYAEMNKR KACRNEEGMQ SNHGTRISTT  540
NERFNQCQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14454512563Homeobox protein Meis2
3k2a_B1e-14454512563Homeobox protein Meis2
4xrs_A1e-14454511158Homeobox protein Meis1
4xrs_B1e-14454511158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G051600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945590.0BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581289.10.0homeobox protein ATH1 isoform X2
SwissprotP487311e-102ATH1_ARATH; Homeobox protein ATH1
TrEMBLK7KT710.0K7KT71_SOYBN; Uncharacterized protein
STRINGGLYMA06G05430.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.18e-96homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]