PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G226700.1.p
Common NameGLYMA_04G226700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 604aa    MW: 67628.6 Da    PI: 5.07
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G226700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-52221481127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeelv++yL++k++g+  e+  vi+e+d++k+ePwd+p  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgk
  Glyma.04G226700.1.p  22 LPLGFRFRPTDEELVNYYLRQKINGNGREV-WVIREIDVCKWEPWDMPglSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGK 110
                          699************************999.89***************6447788888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          d++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr
  Glyma.04G226700.1.p 111 DRKIKS-GTILIGMKKTLVFYTGRAPKGNRTNWVMHEYR 148
                          ******.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-6117172IPR003441NAC domain
PROSITE profilePS5100556.18222172IPR003441NAC domain
PfamPF023652.4E-2823148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MGSVDCYPSR VDDAAVVSLD SLPLGFRFRP TDEELVNYYL RQKINGNGRE VWVIREIDVC  60
KWEPWDMPGL SVVQTKDPEW FFFCPQDRKY PNGHRLNRAT NNGYWKATGK DRKIKSGTIL  120
IGMKKTLVFY TGRAPKGNRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKHDESLEVS  180
HCDEAEPTAS TPVAAYYSTE EIQSDLAVVA GSPSQVTEDD KHQSMIPAHS EEAISNVVTP  240
VDRRTDGYDA CDAQNQIELP TAEEFQPLNF DIYYDPRSEL LDGKLFSPVL AHIQPEFHYQ  300
ANIESDGRYG LQYGTNETNM SDFLNSVVNW DQVPFEDPNC QQQSYPLFNV KDNILNSDLD  360
SELANMTCMQ AGYAEGAIDG RIPLLITSEF CSTTGIPVDC VGDEQKSNVG LFQNNSQRAF  420
TDVNMGQVYN VVDDYEQQRI CSAVASGNTG IIRRHREVRN EQLSINSTQG TAQRRIRLSM  480
ATHGSNKTVK SESCAQEELY AKPVIAVGEK GSENHASDES ATLTNDGNEL QKTPESTGKR  540
KISQQVTKAG STLGLKDLFL LRRVPHISKA SSNRTKCSSV FVLSAFVMVS LVVFTDIWGY  600
LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-452117514171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.551110.0flower| hypocotyl| leaf| pod| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G226700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984320.0BT098432.1 Soybean clone JCVI-FLGm-23K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276211.20.0NAC transcription factor
TrEMBLI1JYG10.0I1JYG1_SOYBN; Uncharacterized protein
STRINGGLYMA04G40450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-95NAC transcription factor-like 9