PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G145800.1.p
Common NameGlyma03g30200.1, LOC100784703
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 289aa    MW: 31674.8 Da    PI: 8.2049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G145800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17127181256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Le+ F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Glyma.03G145800.1.p 127 RKKLRLSKQQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 181
                          788899***********************************************98 PP
2HD-ZIP_I/II126.21.4e-40127216191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Glyma.03G145800.1.p 127 RKKLRLSKQQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELR-A 215
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.03G145800.1.p 216 L 216
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17111177IPR009057Homeodomain-like
SuperFamilySSF466893.23E-18117184IPR009057Homeodomain-like
PROSITE profilePS5007116.941123183IPR001356Homeobox domain
SMARTSM003893.3E-15125187IPR001356Homeobox domain
PfamPF000465.9E-15127181IPR001356Homeobox domain
CDDcd000861.53E-15127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
CDDcd146860.00611176215No hitNo description
PfamPF021832.9E-11183217IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.7E-25183226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELALSLGDT PKTVSLATKN DSVSLCIALA DDKRGSSYPP VQLDLLPSTP VLPFSHSHLR  60
IPWLSDALGM ERVTSEIPVR VVDDTDDGAA LSSPNSAVSS FQMDYCVRNN RKSSEGASDD  120
DENGSSRKKL RLSKQQSAFL EDSFKEHTTL NPKQKLALAK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE YLKRCCESLT EENRRLQKEL QELRALKTCQ PFFMQLPATT LTMCPACERV  240
ATNTATGAAA AAASTTTTNN NNASAPTNNN SVSQISAAMS VDKPRILP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131SRKKLRL
2175183RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.625220.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G145800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311630.0KT031163.1 Glycine max clone HN_CCL_195 homeodomain/HOMEOBOX transcription factor (Glyma03g30200.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520539.10.0homeobox-leucine zipper protein HOX11
RefseqXP_028225408.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466653e-82HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0K2CTA00.0A0A0K2CTA0_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445LBK60.0A0A445LBK6_GLYSO; Homeobox-leucine zipper protein HAT14
TrEMBLI1JNL90.0I1JNL9_SOYBN; Uncharacterized protein
STRINGGLYMA03G30200.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-68homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]